Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1083 ATGGAGTTTTTCGGAAAAACCAAGGTAGTGAAGCTTCGGAGCCACATGAACAAGTACCTGGTGGCCGACGAAGACGGCGAGAAGGTCCACCAGAGCAGGAGCGGCTCCGGGAGGAGAGCAGCATGGACTGTGGAGCCAGTGAAGAACAACCACCGCGTGAGGTTCAAGAGCTGCCACGGGAAGTACTTAACCGCGACGGAGACGCCGTTTCTGTTGGGGATGACGGGGAAGATGGTGAAACAAACGGAAGGGGGTGTGGATGGGAAGGAAGAGTGGGAACCGATACGGGATGGGTTTGAGGTGAAGCTGAGGAGCTGGTGCGGGAAGTTTCTGAGGGGGAACGGTGGCACGCCGCCGTGGAGGAACACGGTGACGCATGATGAACCACATAGCTCCGCCACGAGGGATTGGGTTCTGTGGGAGGTTGAGGCGGTGGAGGAGGATGAGAATTCGATTGTGGATGAGTTTCCTGAGAGTGTGTTGTCCTCTTTTGCTAATTCTGATGATCTCTCCGTCGCTGGTTCTGATGAACCGTCGTCGCCGATGTCCGTTTTCAGTCTCACTTCTCCGACGCCGGTGCGAAATTTTCAGGCAGTGAGCTCCAACAAATTCAGAACAGGCATGGACTTCTTCCACTTCGCCAAGGCGGTGCGCCTCCGCAGCAACCACGACAAATACCTCCTCGCCGAGGAAGATGAAGAATCCGTCACACAAGACCGAAACGGCTCCTCCAAGTCCGCCAGCTGGCTCGTCGAGTACGTCCCTGAATACGGCAACATCATCCGCCTCAAAAGCTGCTACGGCAAATACCTCACCGCCTCCGACCACCCCTTCCTCCTCGGCATGACCGGCCGCAAGGTGCTCCAGACACTTCCCTCCTCCACGCTTGACTCCGCCGTGGAATGGGAACCCATCAGGGACGGTGGTCGTGTCAAGCTGAAGACCCGCTACGGCAACTTTCTCAGAGCGAATGGCGGCCTTCCGCCGTGGAGGAACACCGTCACTCATGATATCCCCCACCGGACCGCCACGCAGGATTGGATCTTGTGGGATGTTGATATCGTCGAGATTCATGTTAAACAACAACAACAACCTTCTGCTCCACCCCTCTCTGTTCCGGACTCTGTTCCCACAAAGCCTGTGGCGGCTCCCACCATATCTGCTAGCTTTTCACGGCAACAGTCGAATGATAGTGTTGGTTATTCACCGAAGAAGACGACGGAGGGGCGAACTATATACTACCATGTTGCTGAAGATGATGGAGAGGTGAGTGATGAAGGTGTACAAGGGTATTCTTTGATTTTCAAAGGGAATGGAGTTGAAGAATTGAAGAGAAAGTTTGAGGAAGAGACAGGGCTAGAGGGAGTGATTGTGTGTAATCGGAGTCCTTTGAGTGGGAAGCTTTATCCTCTTCGCTTGCAGCTTCCTCCCAACAATGTCACCATGCATGTTGTTCTGGTTCTTCCTTTCTCTAAAGTGGCAAGAGATTTTGAGGCACAAGGTTTCATATGA 1512 0.5384 MEFFGKTKVVKLRSHMNKYLVADEDGEKVHQSRSGSGRRAAWTVEPVKNNHRVRFKSCHGKYLTATETPFLLGMTGKMVKQTEGGVDGKEEWEPIRDGFEVKLRSWCGKFLRGNGGTPPWRNTVTHDEPHSSATRDWVLWEVEAVEEDENSIVDEFPESVLSSFANSDDLSVAGSDEPSSPMSVFSLTSPTPVRNFQAVSSNKFRTGMDFFHFAKAVRLRSNHDKYLLAEEDEESVTQDRNGSSKSASWLVEYVPEYGNIIRLKSCYGKYLTASDHPFLLGMTGRKVLQTLPSSTLDSAVEWEPIRDGGRVKLKTRYGNFLRANGGLPPWRNTVTHDIPHRTATQDWILWDVDIVEIHVKQQQQPSAPPLSVPDSVPTKPVAAPTISASFSRQQSNDSVGYSPKKTTEGRTIYYHVAEDDGEVSDEGVQGYSLIFKGNGVEELKRKFEEETGLEGVIVCNRSPLSGKLYPLRLQLPPNNVTMHVVLVLPFSKVARDFEAQGFI* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1083 503 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 1 191 - -
Lja2g1083 503 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 191 - -
Lja2g1083 503 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 203 492 - -
Lja2g1083 503 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 203 492 - -
Lja2g1083 503 MobiDBLite consensus disorder prediction 382 404 - -
Lja2g1083 503 SUPERFAMILY Actin-crosslinking proteins 212 355 IPR008999 -
Lja2g1083 503 SUPERFAMILY Actin-crosslinking proteins 8 144 IPR008999 -
Lja2g1083 503 MobiDBLite consensus disorder prediction 364 404 - -
Lja2g1083 503 Pfam Domain of unknown function (DUF569) 208 350 IPR007679 -
Lja2g1083 503 Pfam Domain of unknown function (DUF569) 1 140 IPR007679 -
Lja2g1083 503 Gene3D - 6 143 - -
Lja2g1083 503 Gene3D - 216 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1083 Lja-Chr2 10307659 10313563 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1083 - - gmx:100811752 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1083 2 10307659 10313563 Lja2g1083 2 10307659 10313563 ECH
Lja2g1083 2 10307659 10313563 Lja2g1083 2 10307659 10313563 PCT