Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1076 ATGGATTATCAGCTGCTACAGATAGTGGCATTTCTGACAGTGATAGCATTTGGAGGAGGCCTAAAGAGAACATCAGCAGAAGCATGCAGTTCAAATGACTTGGAAGGTTTGATAGGCTTCAAGAATGGAATTCAGATGGATACTTCTGGTCGTTTGGCAAAGTGGGTTGGTAGTAGCTGTTGTGAGTGGGAAGGCATTGTTTGTGAAAATGCAACCACTAGAGTGACACAGATCCATCTTCCAGGGTTCATAGAGAAAGATTTGTTTCAAACTCAGATGATTGGTAAGATTTCTCCTTCCATAACACTCCTCACCTCTCTTGTAATACTTGACCTTGGTGGTTTAGTAGGTCTCAGTGGGACAATTCCACAAACAATTGGTGTGCAACTGCCAAACCTCCAAAAGCTCTACCTTTTTGGCAACAATTTAACTGGTCCAATACCAGAAAGCATTGGTGAGTTGCCAAACCTCCAAGAACTGGCACTGCATGAAAATAAGATATCCGGGTCGATCCCTTCTAGCATTGGAAGCTTAAAAAGCCTCAAAAGTTTGCTGCTTTATTCAAATAAAATTTCAGGTACAATACCCATTTCACTAGGGAATTTGACAAATTTGGTAGAATTGGATGTTCATGACAATGCTCTTAATGGTAATATACCCAACAGAATTGGTCAGATGAAGGCTCTTGAAAAGCTTGATCTTTCAAGCAATTCACTAAGTGGGAGCATACCTACTTCACTATCCAATTTAAGTGCAATTTCAGTTTTGTATATGGACACAAACTCTCTTGAGGGAACCATTCCATTTCCCTCAAGATCAGGTGAAATGCCATCTCTTGGCTTCTTAAGACTCCATGATAACCATCTTAATGGAAATATACCTCCTAGTCTTGGTTACCTGGTTTCTCTTCAGAGAGTTTCATTAGCAAACAACAAGCTTGAAGGAGCTTTGCCTTCTAGTTTGGGCAATTTGCTTTCTTTGACAGAACTTTACTTTAGTGGCAACTCATTGTCTGGCCAAATACCAAAATCAATAGGCCAACTTTCTCAGCTAATGATGCTGAACATGTCCAACAATTTGATTGAAGGACCATTGCCTCAAGAGATTTCTCCCCTACACAATCTTCAAACACTTGATCTTTCTTTCAACCCTCTGGACCTCTCTTCCTTTCCAGAGTGGCTAACAAACCTGCCATCGCTTTCGCGCATTCACTTCGCAGGATGCGGTATCCAGGGACAAATTCCAGACATTCTGCAAACAACCCTCAGTCCAATACAGGAACTAGACTTATCAGTGAACCTTCTCACTGGAACCATACCATCATGGATAGGATCCCTCAGTCAGCTCTACTTGCTAAATCTCTCGAGGAATTCACTTGATTCACACATCCCTGATTCAGTTACAAGCTTGTCTGATCTGGGAGTTCTTGATCTTCACTCAAATAAGTTAACAGGCTCCATAACCGGAGCATTTGATATCGAACAAGGTACTTCTGGGGGATCACTAACATATATTGATCTTTCTGATAACAACTTCTCAATTGGAGTTGAGGAAATTGGTGCAGGAAGGCAGGTCCATATTCAGTTTCTGAATTTGTCTCATAACCTTCTGAAGGGTACATTGCCAAGTTCCCTTGGGAAACTGAATTCCATTCACAGTTTGGATTTGAGCTTCAATGAGTTAGTCTCCAACTTGCCAGAGGTGCTGGCAAACTTGACATTGTTGGAGAGACTCAAGCTGCAAAGAAACCATTTCAGTGGCAATATACCCAAGGGACTTCTCAAGCTGACAAAGCTGAAGGAATTGGATTTATCAGACAATGTGCTTCAAGGGAAAATCCCAGAGGGTAAACCACTAACTGACTTTCCTGGGAGTTCTTATTCTGGAAACAAAGGTTTGTGTGGGAAGCCTCTCAGTCCTTGTTAA 1926 0.4159 MDYQLLQIVAFLTVIAFGGGLKRTSAEACSSNDLEGLIGFKNGIQMDTSGRLAKWVGSSCCEWEGIVCENATTRVTQIHLPGFIEKDLFQTQMIGKISPSITLLTSLVILDLGGLVGLSGTIPQTIGVQLPNLQKLYLFGNNLTGPIPESIGELPNLQELALHENKISGSIPSSIGSLKSLKSLLLYSNKISGTIPISLGNLTNLVELDVHDNALNGNIPNRIGQMKALEKLDLSSNSLSGSIPTSLSNLSAISVLYMDTNSLEGTIPFPSRSGEMPSLGFLRLHDNHLNGNIPPSLGYLVSLQRVSLANNKLEGALPSSLGNLLSLTELYFSGNSLSGQIPKSIGQLSQLMMLNMSNNLIEGPLPQEISPLHNLQTLDLSFNPLDLSSFPEWLTNLPSLSRIHFAGCGIQGQIPDILQTTLSPIQELDLSVNLLTGTIPSWIGSLSQLYLLNLSRNSLDSHIPDSVTSLSDLGVLDLHSNKLTGSITGAFDIEQGTSGGSLTYIDLSDNNFSIGVEEIGAGRQVHIQFLNLSHNLLKGTLPSSLGKLNSIHSLDLSFNELVSNLPEVLANLTLLERLKLQRNHFSGNIPKGLLKLTKLKELDLSDNVLQGKIPEGKPLTDFPGSSYSGNKGLCGKPLSPC* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1076 641 Gene3D Ribonuclease Inhibitor 272 352 IPR032675 -
Lja2g1076 641 Pfam Leucine rich repeat 326 385 IPR001611 GO:0005515
Lja2g1076 641 Pfam Leucine rich repeat 425 483 IPR001611 GO:0005515
Lja2g1076 641 Pfam Leucine rich repeat 155 215 IPR001611 GO:0005515
Lja2g1076 641 PRINTS Leucine-rich repeat signature 372 385 - -
Lja2g1076 641 PRINTS Leucine-rich repeat signature 229 242 - -
Lja2g1076 641 ProSiteProfiles Leucine-rich repeat profile. 598 620 IPR001611 GO:0005515
Lja2g1076 641 SMART LRR_typ_2 470 493 IPR003591 -
Lja2g1076 641 SMART LRR_typ_2 572 596 IPR003591 -
Lja2g1076 641 SMART LRR_typ_2 130 152 IPR003591 -
Lja2g1076 641 SMART LRR_typ_2 372 397 IPR003591 -
Lja2g1076 641 SMART LRR_typ_2 300 323 IPR003591 -
Lja2g1076 641 SMART LRR_typ_2 154 178 IPR003591 -
Lja2g1076 641 SMART LRR_typ_2 324 348 IPR003591 -
Lja2g1076 641 SMART LRR_typ_2 548 571 IPR003591 -
Lja2g1076 641 SMART LRR_typ_2 226 250 IPR003591 -
Lja2g1076 641 SMART LRR_typ_2 446 469 IPR003591 -
Lja2g1076 641 SMART LRR_typ_2 202 225 IPR003591 -
Lja2g1076 641 Pfam Leucine Rich Repeat 132 154 IPR001611 GO:0005515
Lja2g1076 641 Pfam Leucine Rich Repeat 229 250 IPR001611 GO:0005515
Lja2g1076 641 ProSiteProfiles Leucine-rich repeat profile. 374 394 IPR001611 GO:0005515
Lja2g1076 641 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 641 - -
Lja2g1076 641 SUPERFAMILY L domain-like 87 268 - -
Lja2g1076 641 Gene3D Ribonuclease Inhibitor 85 271 IPR032675 -
Lja2g1076 641 Gene3D Ribonuclease Inhibitor 354 641 IPR032675 -
Lja2g1076 641 Gene3D Ribonuclease Inhibitor 26 84 IPR032675 -
Lja2g1076 641 SMART LRR_sd22_2 178 199 - -
Lja2g1076 641 SMART LRR_sd22_2 372 389 - -
Lja2g1076 641 SMART LRR_sd22_2 202 221 - -
Lja2g1076 641 SMART LRR_sd22_2 226 252 - -
Lja2g1076 641 SMART LRR_sd22_2 324 350 - -
Lja2g1076 641 SMART LRR_sd22_2 130 156 - -
Lja2g1076 641 SMART LRR_sd22_2 596 619 - -
Lja2g1076 641 SMART LRR_sd22_2 548 567 - -
Lja2g1076 641 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Lja2g1076 641 SUPERFAMILY L domain-like 200 630 - -
Lja2g1076 641 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 3 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1076 Lja-Chr2 10268181 10270207 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1076 78 641 Receptor kinase-like Gene Family AT5G46330 33.062 4.52e-73 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1076 - - gmx:100799647 1019.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1076 2 10268181 10270207 Lja2g1076 2 10268181 10270207 ECH
Lja2g1076 2 10268181 10270207 Lja2g1076 2 10268181 10270207 PCT