Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1060 ATGGCCTTCGTCGCCACCACCAACACTCCACCACTTATCCTCTCTCACTCACTCCGACCACCGCGGCGATACCCTTCTTTCTCCCTCCTCCCCATTCCCACCACCACTCTCCCTCTCTCTCTCCGCTCCCTCTCTTCCACTCTCAAATTTCGTCTCTCCTTCTCCTTCAATCCCCCAACCTCATCATCTCTCCCCACCTTCTCCGACGCCGGAGAAGACGACGTCGAAGACGAAGATGATGATGATGAAGAAGAAGAAGAGTATGAAGAAGAGGAATACGAAGACGACGATGACGACGACGTTGCGGCTGATGAATACGACGACGAAGTTCCCGACGAAGGTGAAGCGTTCGATGCATCCGCTCGCCGCGAAGAATTCAAGTGGCAGAGAGTCGAGAAGCTCTGCAACGAAGTCAGAGAGTTTGGAGCTGAAATCATTGATGTCGATGAACTCGCCTCCGTTTACGATTTCCGAATCGACAAGTTTCAGCGGTTGGCGGTTCAAGCTTTTCTGAGAGGCTCTTCGGTGGTGGTTTCTGCTCCGACTAGCAGCGGGAAGACTTTGATTGCGGAAGCTGCAGCGGTGGCTACAGTGGCGAGGGGACGGCGAATTTTCTACACCACTCCGCTCAAGGCATTGTCCAATCAGAAGTTTCGCGAATTCCGGGAGACGTTTGGCGACAGCTATGTTGGTCTTCTTACCGGTGATTCCGCGGTAAACAAAGATGCGCAGGTTTTGATTATGACCACGGAGATATTGCGGAACATGTTGTATCAGAGTGTTGGTAATGTATCTTCTTCTCGAAGTGGACTTGTCAATGTTGATGTGATTGTTTTGGATGAAGTTCATTACCTTAGCGACATATCTCGTGGTACAGTTTGGGAAGAGATTGTTATTTATTGCCCTAAAGAAGTCCAGCTTATTTGTCTGTCCGCAACCGTTGCAAATCCGGATGAGTTGGCTGGTTGGATTGGCCAGATTCATGGTAAAACGGAGTTGGTAACATCATCTAAACGACCAGTTCCTCTGACATGGCATTTTTCTATGAAGAATTCCTTATTACCACTTCTTGACGAGAAAGGGACACGCATGAACAGGAAGCTGTCACTCAATTATTTACAACTTCAAGCTGCAGGATATAAACCTTACAAGGATGATTGGTCTAGAAAAAGGAATGCCCGGAAACGAGGATATCGCATGAGCTATGATAGTGATGAAAGCATGTTTGAACAACGTTCTCTCTCAAAAAATAACATAAATGCAATTCGCCGTTCACAAGTTCCTCAAATAATTGATACATTATGGCACATTGAGCCTAGGGACATGCTCCCAGCTATTTGGTTTATCTTTAGCAGGAAGGGTTGTGACGCCGCAGTGCAATATATTGAAGATTGCAAACTTTTAGACGAGTGTGAAAAAAGTGAGGTCGAACTTGCCTTGAAGAGGTTCCGCATTCAGTATCCTGATGCTGTCAGAGAAACAGCTGTGAAAGGACTTTTACAGGGGGTTGCCGCACATCATGCAGGATGTCTACCTTTGTGGAAAGCATTCATAGAAGAATTGTTTCAAAAAGGACTAGTCAAAGTTGTTTTTGCTACAGAGACCCTGGCTGCTGGAATCAATATGCCTGCTAGAACCGCTGTTATTTCATCCCTCAGCAAAAGAATTGATAGTGGACGTAGACCATTAAGCTCAAATGAACTGCTTCAGATGGCCGGGCGTGCAGGACGCAGAGGCATTGATGAAAGTGGCCATGTAGTCCTCATCCAGACTCCTAATGAAGGCGCTGAAGAGTGCTGCAAGGTACTGTTTGCTGGACTAGAGCCTCTAGTGTCACAGTTTACTGCTTCATATGGAATGGTTTTAAATCTTCTTTCTGGAGTGAAAGCCATTCACAGGTCAAACGAATCAGATGACATGAGACAATCCACAGGGGGGAGAACTTTGGAAGATGCTAGGAAGTTAGTTGAGCAAAGTTTTGGAAATTATGTTAGTAGCAATGTTATGCTGGCTGCTAAAGAGGAGCTGAAAAAAAATGAGAAAGAAATTGAGTTGCTGATGTCAGAAATCACAGACGAAGCCATAGATAGAAAAAGCAGGAAGGCTTTGTCCCAGAAACAATACAAGGAGATTGCAGAATTACAGGAAGATTTAAGGGCAGAAAAACGTGTACGTACTGCATTGCGGAGACAGATGGAAGCAAAGAGAATATCTGCCCTGAAACCTTTATTGGACGACCCTGAAAGTGGACATTTACCATTTTTGTGCTTGCAGTATAGAGATTCTGAAGGTGTTCTACATTCCATTCCTGCCGTGTTTTTGGGGAAGGTTGACTCCCTTAATGCTTCAAAACTCAAAGACATGATTTCTTCTGTCGATTCTTTTGCATTAAATGTAGCAGATGCAGAGCGAAGTCTTCCTGATTCTGTATTGAATGAAGATCTTGAACCATCATATCATGTAGCTCTTGGTTCAGATAACTCTTGGTATCTATTTACAGAAAAGTGGATTAAAACAGTATATGGGACAGGCTTTCCTGACACTCCATTGGCTCAAGGGGATGCTCGACCTCGGGAAATTATGAGTACTCTGCTTGATAAGGAAGACATGAAGTGGGATAAGCTTGCTCACTCTGAACATGGTGGTTTATGGTTCATGGAAGGATCTCTAGAGACGTGGTCTTGGAGCTTGAATGTTCCTGTTTTGAGTAGCTTCTCTGAAAATGATGAACTGCTACTGAAGTCTCAAGCCTACAGAGATGCTATTGAACAATACAAGGATCAAAGAAATAAAGTTTCACGCTTGAAGAAAAGGATATCTCGTACGGAAGGCTATAAAGAATATAACAAAATCATAGACGGGGTCAAGTTTATTGAGGAGAAAATCAAGCGCCTGAAGACTAGATCTAAGCGATTGACTAACAGGATAGAACAAATTGAACCCTCAGGATGGAAGGAGTTTATGCAGGTTAGCAATGTCATACATGAAACCAGAGCCTTAGACATCAATACACATGTTATATTTCCGCTTGGTGAAACTGCAGCTGCAATTCGAGGAGAAAATGAGCTTTGGCTTGCAATGGTTCTTCGTAGTAAAATTTTAGTAGGATTAAAACCTCCACAGCTTGCTGCAGTGTGTGCAGGTTTGGTGTCCGAGGGTATCAAAGTCAGACCCTGGAAAAACAACAGTTTTATCTATGAGCCTTCTGCAACTGTAGTCAATTGCATAGGGTTACTGGGTGAGCAAAGAAGCGCCTTATTGGCAATTCAGGAGAAACACGGGGTAACTATATCTTGCTGTTTGGATACCCAGTTCTGTGGTATGGTTGAGGCATGGGCTTCTGGGTTAACATGGAGAGAAATAATGATGGATTGTGCAATGGATGATGGTGATCTAGCTCGTCTCCTGCGACGGACCATTGATCTATTAGCTCAGATTCCAAAATTGGCAGATATTGATCCATTGTTGCAGCGCAATGCAAGGGCTGCTTCTGATGTCATGGACAGGCCTCCAATAAGTGAGCTTGCTGGGTAG 3534 0.4445 MAFVATTNTPPLILSHSLRPPRRYPSFSLLPIPTTTLPLSLRSLSSTLKFRLSFSFNPPTSSSLPTFSDAGEDDVEDEDDDDEEEEEYEEEEYEDDDDDDVAADEYDDEVPDEGEAFDASARREEFKWQRVEKLCNEVREFGAEIIDVDELASVYDFRIDKFQRLAVQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRIFYTTPLKALSNQKFREFRETFGDSYVGLLTGDSAVNKDAQVLIMTTEILRNMLYQSVGNVSSSRSGLVNVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSMKNSLLPLLDEKGTRMNRKLSLNYLQLQAAGYKPYKDDWSRKRNARKRGYRMSYDSDESMFEQRSLSKNNINAIRRSQVPQIIDTLWHIEPRDMLPAIWFIFSRKGCDAAVQYIEDCKLLDECEKSEVELALKRFRIQYPDAVRETAVKGLLQGVAAHHAGCLPLWKAFIEELFQKGLVKVVFATETLAAGINMPARTAVISSLSKRIDSGRRPLSSNELLQMAGRAGRRGIDESGHVVLIQTPNEGAEECCKVLFAGLEPLVSQFTASYGMVLNLLSGVKAIHRSNESDDMRQSTGGRTLEDARKLVEQSFGNYVSSNVMLAAKEELKKNEKEIELLMSEITDEAIDRKSRKALSQKQYKEIAELQEDLRAEKRVRTALRRQMEAKRISALKPLLDDPESGHLPFLCLQYRDSEGVLHSIPAVFLGKVDSLNASKLKDMISSVDSFALNVADAERSLPDSVLNEDLEPSYHVALGSDNSWYLFTEKWIKTVYGTGFPDTPLAQGDARPREIMSTLLDKEDMKWDKLAHSEHGGLWFMEGSLETWSWSLNVPVLSSFSENDELLLKSQAYRDAIEQYKDQRNKVSRLKKRISRTEGYKEYNKIIDGVKFIEEKIKRLKTRSKRLTNRIEQIEPSGWKEFMQVSNVIHETRALDINTHVIFPLGETAAAIRGENELWLAMVLRSKILVGLKPPQLAAVCAGLVSEGIKVRPWKNNSFIYEPSATVVNCIGLLGEQRSALLAIQEKHGVTISCCLDTQFCGMVEAWASGLTWREIMMDCAMDDGDLARLLRRTIDLLAQIPKLADIDPLLQRNARAASDVMDRPPISELAG* 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1060 1177 Coils Coil 704 731 - -
Lja2g1060 1177 Coils Coil 908 942 - -
Lja2g1060 1177 MobiDBLite consensus disorder prediction 70 114 - -
Lja2g1060 1177 Pfam DEAD/DEAH box helicase 162 315 IPR011545 GO:0003676|GO:0005524
Lja2g1060 1177 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 71 1173 - -
Lja2g1060 1177 Gene3D - 340 610 IPR027417 -
Lja2g1060 1177 Gene3D - 955 1169 - -
Lja2g1060 1177 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 426 625 IPR001650 -
Lja2g1060 1177 Coils Coil 955 975 - -
Lja2g1060 1177 MobiDBLite consensus disorder prediction 61 115 - -
Lja2g1060 1177 Gene3D - 118 339 IPR027417 -
Lja2g1060 1177 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 167 332 IPR014001 -
Lja2g1060 1177 Coils Coil 669 693 - -
Lja2g1060 1177 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 71 1173 - -
Lja2g1060 1177 SMART helicmild6 493 579 IPR001650 -
Lja2g1060 1177 Pfam DSHCT (NUC185) domain 1006 1172 IPR012961 -
Lja2g1060 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 593 IPR027417 -
Lja2g1060 1177 CDD SF2_C_Ski2 423 591 - -
Lja2g1060 1177 SMART DSHCT_2 1002 1176 IPR012961 -
Lja2g1060 1177 SMART ultradead3 155 346 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1060 Lja-Chr2 10050541 10056599 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1060 K26077 - gmx:100780908 1835.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1060 2 10050541 10056599 Lja2g1060 2 10050541 10056599 ECH