Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1057 ATGAGAACCCCTTTTCACTCTCTTCCACTATTATTTTTCAGCCTATCTCTCTTATTGGGCCAATGCAGGCCCGACCCAGACCCACTTCAAGACTACTGCATTGCAGATAACAAAAACACATTTTTCATCAACGGTGTCCCCTGCATTGACCCAAAACAAGCTTCCTCCTCACACTTTGTCACATCCTCTCTATCCAAGCCCGGCAACACCACTAACAGTTTCGGCTTCAGCGTCACCGCGACCAACACTGTCAACCTTCCTGGGCTTAACACCTTGGGCCTGATCCTGGCCCGTGTTGACATAGCGGCTAATGGGATAGTGCCGCCTCACTCGCACCCACGGGCCTCGGAAGTCATTACTTGCCTCAAGGGCCTGCTTCTCGTGGGCTTTACCGATACTTCTAACCGGGCCTTTACGCAGAACTTGAACCCGGGTGAGTCGTTTGTGTTTCCAAAGGGTTTGATACATTACATTTACAATCGTGACTCTAAGCAACCGGCATTGGCATTGTCTGGGCTTAATAGTCAGAACCCGGGTGCACAAATTGCTTCTCTTGCTACTTTTGCTAGCAAGCCTGCAATTCCTGATGAAATTCTCAAGAGGGCTTTTCAAATTAGTGGTCAAGAAGTGGAGATTATTCGTAGAAACCTTGGTGGTTGA 660 0.4864 MRTPFHSLPLLFFSLSLLLGQCRPDPDPLQDYCIADNKNTFFINGVPCIDPKQASSSHFVTSSLSKPGNTTNSFGFSVTATNTVNLPGLNTLGLILARVDIAANGIVPPHSHPRASEVITCLKGLLLVGFTDTSNRAFTQNLNPGESFVFPKGLIHYIYNRDSKQPALALSGLNSQNPGAQIASLATFASKPAIPDEILKRAFQISGQEVEIIRRNLGG* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1057 219 SMART Cupin_1_3 62 211 IPR006045 -
Lja2g1057 219 Gene3D Jelly Rolls 24 219 IPR014710 -
Lja2g1057 219 SUPERFAMILY RmlC-like cupins 25 215 IPR011051 -
Lja2g1057 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 10 218 - -
Lja2g1057 219 PRINTS Germin signature 140 160 IPR001929 GO:0030145
Lja2g1057 219 PRINTS Germin signature 110 130 IPR001929 GO:0030145
Lja2g1057 219 PRINTS Germin signature 174 189 IPR001929 GO:0030145
Lja2g1057 219 ProSitePatterns Germin family signature. 105 118 IPR019780 GO:0030145
Lja2g1057 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 10 218 - -
Lja2g1057 219 CDD cupin_OxOx 25 217 - -
Lja2g1057 219 Pfam Cupin 63 210 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1057 Lja-Chr2 10025535 10026374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1057 1 218 Miscellaneous Gene Families AT5G39130 41.441 1.64e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1057 - - lja:Lj2g3v1365980.1 432.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1057 2 10025535 10026374 Lja2g1057 2 10025535 10026374 ECH