Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1053 ATGGAGTGCGCGGCAAAGGGGAGCGGAACACGGTGTAGCGCCACCGCCACGAGACTCTGTGCTCGCTGCGAAGTCGTTGCTTATTGCTCTCTCCCTCACCAGATTGCGCACTGGAATCACCACAAACTCGAGTGCGAGAGGTTGCAACAACAGAAGGAGAGTATCGATGTCGTCAATGATTATCCGTTTACTTTTTCCAATGAAGCCACGTTCAAGGTTTGTGCGAAGCAGGAAACTAGATGTTCATTTTTGAGCAAGAGAGGCCTTCATCAAGTGGGAATGTGGATGCATGAATGCCAATGTGGGGCATCATCTGCTTCATTTGATTGTTTAGGGTTAAACAGTGGCTGGGATCTCCCTAGTGTTTTGTGTCCATGTTGTGGGCCTGATTCTCCACTATCAGAGCAATTGCATAGTTGGAGAGACTACTACAAGTGGAGGACCATCCCTCTTGATTCACCTGTTGCTTTGCTCCTTCACTGGCCACTTACAATATATCATGCTGCTCAACTTGTTGGAAAGTCAACCTTGAATCAAGAAGTCGGAGATAAGTTGTACATACATTACCTTGGACCTGAGAAAGAGCTGCTACAACTTGCTGTGTTTGGAGAATTACAGGCCCTCTTCCCTGGTGTACACATTCATATAGAACTTGTTGGACCTGCAGTTCCTCCTCATAGGGACGGTGAGAAGATCAGCATTTCTAGGTATCCTTGTTGCAATGAAGATGAGTGTGAGTGCAAACTAGCGAGTGAAAATATGATCATAGGAGCACAAACTGGTACCACTTCGAAGCTGACATTGCAGCTTTGGCGAGGATTCTACCATGACCGATACATAGATATGGTTAAGAATTCCTCCCCTCACCTTGTGATTGCTCCTAATGGTGGAATTGCTGCCTACTCAAGCTGGTTACCAAGTATTGAGTTAATTAAAAAGATTGATATCCCAGCTGTTTTTACTGATTATTGTGAGGAAGCTTGTAATCTTGCAGCAAGTTGCATTGAGTCTGTAACTGGACATCCTCTTAGATTGCCAGTTCAGTTAAATCCTTTCAGGCAGCCTTTGGCCGTGGAAGGCAGCGTGCTGTTGCTTCCCTGCTACTCAAATTGCTTTCTATTTGGGATGTAA 1131 0.4553 MECAAKGSGTRCSATATRLCARCEVVAYCSLPHQIAHWNHHKLECERLQQQKESIDVVNDYPFTFSNEATFKVCAKQETRCSFLSKRGLHQVGMWMHECQCGASSASFDCLGLNSGWDLPSVLCPCCGPDSPLSEQLHSWRDYYKWRTIPLDSPVALLLHWPLTIYHAAQLVGKSTLNQEVGDKLYIHYLGPEKELLQLAVFGELQALFPGVHIHIELVGPAVPPHRDGEKISISRYPCCNEDECECKLASENMIIGAQTGTTSKLTLQLWRGFYHDRYIDMVKNSSPHLVIAPNGGIAAYSSWLPSIELIKKIDIPAVFTDYCEEACNLAASCIESVTGHPLRLPVQLNPFRQPLAVEGSVLLLPCYSNCFLFGM* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1053 376 PANTHER ZINC ION BINDING PROTEIN 1 376 - -
Lja2g1053 376 Pfam MYND finger 11 45 IPR002893 -
Lja2g1053 376 Gene3D - 4 47 - -
Lja2g1053 376 ProSiteProfiles Zinc finger MYND-type profile. 9 45 IPR002893 -
Lja2g1053 376 Pfam MSS51 C-terminal domain 162 357 IPR046824 -
Lja2g1053 376 PANTHER ZINC ION BINDING PROTEIN 1 376 - -
Lja2g1053 376 SUPERFAMILY HIT/MYND zinc finger-like 11 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1053 Lja-Chr2 9994399 9998216 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1053 K24081 - gmx:100808017 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1053 2 9994399 9998216 Lja2g1053 2 9994399 9998216 ECH