Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1046 ATGAGGTTGATGAGAGCACATAGAAGCTTTCTGTTCCTCTTAGTGTCATCTTTTTTTCTCTTCGTGGATGTCTCTGTATCCGCTCCTTTCATCAATTTGGCACCAGAATCTGGATTGCTAACCAGAGGCGAACAAATTCTATCCATTATTGGAAGGATCCCAAGTAAGTATACTTCCACCGTAAAGGTGATTCCACCCCAAAACACTATTAAAGTTGGAGACTCTGTCAAGGGGTTGGAAAATATTAAAAAATATTTAGATGCGTTGGGATACATCAAGGACTTAGTCCTTGCCTTAAACTCCAACGACACTGATAAGTTTACCGAAGATCTCAAACCTGCCATAATGGAGTACCAGAAGAATTTCAATCTCCCAGTCACTGGAGTGATTGACCAGAATTTGTACAACACCTTGATACAGCCACGTTGCGGCGTCCCTGACTTCACCACCTTGAACGTGGGCACCACGCCCGCGTTCAAGCCATGGTGGAAGTCAGAGAAGAAAGAACTGAGCTACGCTTTTCACCCTCAGAACAACGTCAGTGACGACATCAGGACGGTGTTCCGAGAGGCATTCGACCGTTGGTCAAATGAAACGTCGCTAAACTTCACGGAGACAGCGACGTTTGACGCCTCGGACATCAAGATAGCGTTTGTGAAGTGGGATGGGAAAGGTGGAAGAGTAGGAGCTGCTTATACAAACTATAGTATGCATGCTGGGGGCATGTTTCTGGACATTGATGAGCAATATGTGTTGCTTAATGTCGTGATGCACGAGATTGGTCATTTACTTGGGTTGGGACATTCGTATGAGAAAGAGTCTATCATGTACCCTATAGTGATGCGAGAGAAGATAGACTTCACTGACGATGACAGGTAG 879 0.4505 MRLMRAHRSFLFLLVSSFFLFVDVSVSAPFINLAPESGLLTRGEQILSIIGRIPSKYTSTVKVIPPQNTIKVGDSVKGLENIKKYLDALGYIKDLVLALNSNDTDKFTEDLKPAIMEYQKNFNLPVTGVIDQNLYNTLIQPRCGVPDFTTLNVGTTPAFKPWWKSEKKELSYAFHPQNNVSDDIRTVFREAFDRWSNETSLNFTETATFDASDIKIAFVKWDGKGGRVGAAYTNYSMHAGGMFLDIDEQYVLLNVVMHEIGHLLGLGHSYEKESIMYPIVMREKIDFTDDDR* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1046 292 PRINTS Matrixin signature 255 280 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lja2g1046 292 PRINTS Matrixin signature 188 203 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lja2g1046 292 PRINTS Matrixin signature 138 151 IPR021190 GO:0004222|GO:0006508|GO:0008270
Lja2g1046 292 PANTHER MATRIX METALLOPROTEINASE 66 287 - -
Lja2g1046 292 PANTHER MATRIX METALLOPROTEINASE 66 287 - -
Lja2g1046 292 Pfam Matrixin 166 291 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Lja2g1046 292 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 161 291 - -
Lja2g1046 292 SMART col_5 159 292 IPR006026 GO:0006508|GO:0008237|GO:0008270
Lja2g1046 292 Gene3D Collagenase (Catalytic Domain) 69 292 IPR024079 GO:0008237
Lja2g1046 292 Pfam Putative peptidoglycan binding domain 79 136 IPR002477 -
Lja2g1046 292 SUPERFAMILY PGBD-like 69 147 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1046 Lja-Chr2 9883601 9885479 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1046 - - lja:Lj2g3v1367130.1 572.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1046 2 9883601 9885479 Lja2g1046 2 9883601 9885479 ECH