Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1042 ATGGGACTACTTCTTCAATGTCCCCTGTGTTGCCACACAGAAGATCAACAACCACAATCTGATCACTTCAATCACCTTCATTCAGAATCATCAAACTCTTCCTCCCTATCTTCACAGCCAAGCCTCCCTTCTGTCCCCTCCCTCACCCCACCACCCTCTCATCAAACCACCACCCACCACCAGCTCCTCACCACCGTCAAAGGCCACACCTCCCCCATCTTCTCCCTCACCCTCCACGGCAAATACCTCTACAGCGCCTCTTCCACCTCCGAGATAAGAAGATGCCGCAGGGACCCTTTTCTCCTCCAATCCTCAACCAACAACAACAACGTCGTCGCAACCACCAACGGAGCCATCAAATCCCTCATCGTTTCCGGCGATTTTCTCTTCAGCGCACACCAAGACCACAAAATCCGCGTCTGGAAAATCGAATCCTGTGAAAACAACAACAACAACAACAACCCAAACCAGAGGTTAATCAAAAGCATAGCCACACTCCCCACCTTCAACGACCGATTCTCGAAGCTCTTTTCATCCAAGAACTACGTCGAGGTGCGGCGGCACAAGCGATGCACGTGGGTGCACCACATGGACACCGTCTCTGCTCTTGCTCTGTCTCACGACGGTGCTCTGCTTTACTCTGCTTCATGGGACAGAGCATTCAAAATCTGGCGAACCTCAGATTTCAAGTGTGTGGAGTCTGTCAAGAACGCTCACGAGGATGCGATCAATGCAATCGTCGTGTCCCCTGATGGGGTTGTTTACACAGGCTCTGCAGATAACAGGATCAAGGCATGGAAGGTGCATGCAGGGGAGAAGAAGCATTCTCTGTTGGAAACATTGGAGAAGCATAAATCGGCTGTGAATGCTTTGGCACTGAATGAAGATGGGTCGGTGTTGTATTCAGGAGCATGTGACAGGTCGATTTTGGTGTGGGAGAGGGACGGTGGTGATGGTGGTGGAGAGATGGTGGTGGTGGGTGCTTTGCGGGGGCACACGAAGGCGATATTGTGTTTGGTGGTGGTGGGGGATTTGGTGTTTAGTGGTTCGGCGGATAATAGTGTGAGGGTGTGGAGGAGAGGGGTTGGGAAGAGTTATGCATGTGTGGCGGTGTTGGAAGGTCATCGGCGGCCGGTGAAGTGTTTGGCGGTGGCGGTGGCGGTTGACTTCAATAATGGTGGTGGTCCCGGTGGTGATGATGAAAGTAGTAGTAGTTCTTGTCTGGTTTACAGTGGTAGTCTAGATTGTGACATTAAAGTTTGGAGAATACGCGTTCCATTGCTTTGA 1287 0.5152 MGLLLQCPLCCHTEDQQPQSDHFNHLHSESSNSSSLSSQPSLPSVPSLTPPPSHQTTTHHQLLTTVKGHTSPIFSLTLHGKYLYSASSTSEIRRCRRDPFLLQSSTNNNNVVATTNGAIKSLIVSGDFLFSAHQDHKIRVWKIESCENNNNNNNPNQRLIKSIATLPTFNDRFSKLFSSKNYVEVRRHKRCTWVHHMDTVSALALSHDGALLYSASWDRAFKIWRTSDFKCVESVKNAHEDAINAIVVSPDGVVYTGSADNRIKAWKVHAGEKKHSLLETLEKHKSAVNALALNEDGSVLYSGACDRSILVWERDGGDGGGEMVVVGALRGHTKAILCLVVVGDLVFSGSADNSVRVWRRGVGKSYACVAVLEGHRRPVKCLAVAVAVDFNNGGGPGGDDESSSSSCLVYSGSLDCDIKVWRIRVPLL* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1042 428 SMART WD40_4 59 96 IPR001680 GO:0005515
Lja2g1042 428 SMART WD40_4 365 422 IPR001680 GO:0005515
Lja2g1042 428 SMART WD40_4 228 267 IPR001680 GO:0005515
Lja2g1042 428 SMART WD40_4 322 359 IPR001680 GO:0005515
Lja2g1042 428 SMART WD40_4 186 225 IPR001680 GO:0005515
Lja2g1042 428 SMART WD40_4 274 313 IPR001680 GO:0005515
Lja2g1042 428 SMART WD40_4 108 142 IPR001680 GO:0005515
Lja2g1042 428 Gene3D - 52 178 IPR015943 GO:0005515
Lja2g1042 428 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 27 426 - -
Lja2g1042 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 236 276 IPR001680 GO:0005515
Lja2g1042 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 236 272 - -
Lja2g1042 428 MobiDBLite consensus disorder prediction 18 43 - -
Lja2g1042 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 329 358 IPR001680 GO:0005515
Lja2g1042 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 193 224 - -
Lja2g1042 428 Pfam WD domain, G-beta repeat 124 142 IPR001680 GO:0005515
Lja2g1042 428 Pfam WD domain, G-beta repeat 327 358 IPR001680 GO:0005515
Lja2g1042 428 Pfam WD domain, G-beta repeat 230 267 IPR001680 GO:0005515
Lja2g1042 428 Pfam WD domain, G-beta repeat 367 421 IPR001680 GO:0005515
Lja2g1042 428 Pfam WD domain, G-beta repeat 194 224 IPR001680 GO:0005515
Lja2g1042 428 Pfam WD domain, G-beta repeat 278 312 IPR001680 GO:0005515
Lja2g1042 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 193 234 IPR001680 GO:0005515
Lja2g1042 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 329 358 - -
Lja2g1042 428 CDD WD40 125 422 - -
Lja2g1042 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 281 313 IPR001680 GO:0005515
Lja2g1042 428 Gene3D - 322 427 IPR015943 GO:0005515
Lja2g1042 428 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 27 426 IPR045182 -
Lja2g1042 428 SUPERFAMILY WD40 repeat-like 61 422 IPR036322 GO:0005515
Lja2g1042 428 Gene3D - 179 321 IPR015943 GO:0005515
Lja2g1042 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 281 313 - -
Lja2g1042 428 MobiDBLite consensus disorder prediction 18 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1042 Lja-Chr2 9813757 9815275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1042 238 427 Acyl Lipid Metabolism Gene Families AT3G18860 23.469 4.69e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1042 - - gmx:100778775 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1042 2 9813757 9815275 Lja2g1042 2 9813757 9815275 ECH