Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1026 ATGCTCCGAGCAACTGCGTTTCCGCCACCGTTCAATTCGCCGCCGGTTCTCCCTCGCGCACACACGTGCCATTCTCTTGCACCCGCACGTGTCGTTCAATCTTCCCCTTCTTCCATTTCGAGGTTCGAGTTTCGAGTATTTCAACAACCCTGCGTGAAGAGCCTGCGCGCCGTGCGCGGTGGCGGGGTTGTTACAGCCGTCGCGAAGAAGAAAGGTCGCGGCGGAGTTGGTATCGTGGGAGTCGACGAAGGTTTTGACGAGGAGGAGGAGGGTGATGGTATTGAATACTATGATGATGATGATGATGATGAAGAAGTAGAGGAAGGTGAATTTGATGATGATGGTGGTGATGATGGGGAAGAGGTGCTTCCGTTGGAGCAGATGAAGCAATGGTTTGACAAGAAGCCGAAGGGGTTTGGTGAAGGGAAAGTGTACGACACTTCTGTTGAGGATAAGCTGCTCGAGGAATTGCGCCAGAGTAGAGAAGCTCAAGCTGCTAATTTGGAGAAGCTTAAAGCCAATCCTGTCAAGCCTGCCTCCAACAAAAATGCTCAAAACCAGAAAGATGCTGAAGTTGTTCCACTTGGAGGTCGAGTGCTTTTGGCGAACCTGCCGAAGAAAAAGAACATCCACAGGGACCTGAAATCAGCTATGCAAGGGGTTCCGGGCATAATAAATATAGCTCCAGCTGTTACTGGAAACAAGAAGACAAGGGATCCTATCTGCAAGGGTTTTGCTTTTGTTGATTTTAAGGACAAAAAGGATGCAGTTAGGTTTGTAGAGTTATACACTGGGCAAACTCTAACTTTTGGCAAAATTCAGAAGCAAATAAAATGCGAGGTTGTAAATGCACAGTCTTCATCTTCTTCTCCTGAGTTAAGCAAAAATCTTGGTGCTCTTCCACGTCTCATGGACTCTCCCTTTGAAGAAGATTCAAATGAGGATTCTAATATGGATGATTCTGCCGTCAGTTCCTGGGATGGGACTGATTCAAATGATTTGGATGAAGAACAGGAAAGTGATGGAGAGAATCAAGAGTATGCCACTGCTTTGGATGTGGATTTCGATGACAGTGTGGAAATGACGATTGATTCTGAAATTAATCCACTTCCATCTGAACAGGGTACCATAAACCCCACAGCTGAGCCTGAGAAGAAGTCATCTGCTAAATTTAGACAAGAGAGTGCACCCAAGAAAAAACTAATTTCCAAAAAGAAAGTAAAAAAGGTTTTAGAAATTCCTGGATCAGCAAAAAGGTTGAAGATCAAGGAGAAGGCTGTATTAACTGATGTTTTCTCCAAGTACGGAAAAAGAGCTGTTCTTGCTTCAAAGGATAATTAG 1341 0.4519 MLRATAFPPPFNSPPVLPRAHTCHSLAPARVVQSSPSSISRFEFRVFQQPCVKSLRAVRGGGVVTAVAKKKGRGGVGIVGVDEGFDEEEEGDGIEYYDDDDDDEEVEEGEFDDDGGDDGEEVLPLEQMKQWFDKKPKGFGEGKVYDTSVEDKLLEELRQSREAQAANLEKLKANPVKPASNKNAQNQKDAEVVPLGGRVLLANLPKKKNIHRDLKSAMQGVPGIINIAPAVTGNKKTRDPICKGFAFVDFKDKKDAVRFVELYTGQTLTFGKIQKQIKCEVVNAQSSSSSPELSKNLGALPRLMDSPFEEDSNEDSNMDDSAVSSWDGTDSNDLDEEQESDGENQEYATALDVDFDDSVEMTIDSEINPLPSEQGTINPTAEPEKKSSAKFRQESAPKKKLISKKKVKKVLEIPGSAKRLKIKEKAVLTDVFSKYGKRAVLASKDN* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1026 446 MobiDBLite consensus disorder prediction 88 120 - -
Lja2g1026 446 MobiDBLite consensus disorder prediction 365 383 - -
Lja2g1026 446 Gene3D - 173 291 IPR012677 -
Lja2g1026 446 SUPERFAMILY RNA-binding domain, RBD 174 285 IPR035979 GO:0003676
Lja2g1026 446 Coils Coil 154 174 - -
Lja2g1026 446 CDD RRM_SF 199 268 - -
Lja2g1026 446 MobiDBLite consensus disorder prediction 170 189 - -
Lja2g1026 446 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 16 445 - -
Lja2g1026 446 MobiDBLite consensus disorder prediction 361 395 - -
Lja2g1026 446 MobiDBLite consensus disorder prediction 283 344 - -
Lja2g1026 446 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 284 IPR000504 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1026 - - gmx:100776108 439.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1026 2 9650664 9653506 Lja2g1026 2 9650664 9653506 ECH