Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0997 ATGCTATGCTCTCTAATCCGTTTGCGCCGTTACGCCGCTGCTTCACCCTCTCTTCTCCTCCACCACAACCACCACAATAACCGCTTCTACTCCTCTCCTCCTCCTCCTCCTCCCTCCGCCATGGTTGCTCACGCGAAAGACGATGCCTACCTCACCGCCGCAATCCCAAAGCGCATCAGCATGTTCGAGGCGATTCAGGCTGAACAGCGCACACTCCGGTTAACCCTATCGCCGGATCCTATCAAGGTCACCCTCCCCGACGGCAGCGTTAGGGATGCTAAGAAATGGCAGACCACTCCCCTCGACGTTGCTCGCGACATCTCCAAGAATTTGGCTGCTAACGCTCTCATCGCTAAGGTCAATGGCGTTCTCTGGGACATGGCTCGTCCTCTCGAGGAGGATTGCGAGCTCCAGATCTTCAAGTTCAATGATGATGAAGGAAGAGACACTTTCTGGCATTCCAGCGCTCACATTCTAGGCCAGTCTCTTGAGACTGAGTATGGATGCAAGCTTTGCATTGGGCCTTGTACTACAAGAGGAGAGGGATTCTATTACGATGCGTTTTACGGCGACCTGGGTCTGAATGATGATCATTTCAAGCAAATTGAGGCTGGGGCATTGAAGGCTGCTGCGGAAAAACAACCTTTTGAGCGAATTGAAGTTACCCGTGATCAGGCTCTTGAGATGTTTTCGGAGAATAAGTTTAAGATTGAAATTATCAATGATTTGCCAGCTGACAAGACTATCACGGTATACAGATGTGGTCCCCTCGTTGATTTGTGTCGTGGACCACATATACCTAATACATCCTTTGTCAAAGCAATTGCATGTTTAAAGGCTTCATCAGCATATTGGAGGGGGGACAAAGATCGTGAAAGTTTACAAAGAGTTTATGGCATATCTTATCCTGATCAGAAGAGTTTAAAGGAATATTTGCATAGGCTGGAAGAGGCTAAAAAGTATGATCATAGGATTTTGGGTGTGAAGCAGGAGCTTATCCTTCATCATGAATGGAGCCCGGGAAGCTGGTTTTTCCTTCCACATGGTGCTCGAATCTACAACAAACTCATGGATTTCATTCGAAATCAGTACAGAGATCGGGGCTATCAAGAGGTCATATCCCCGAATGTATTTAACATGGAGTTGTGGGAGAAATCTGGTCATGCTGCAAACTATAGAGAGGATATGTTTGTCTTTGAGATTGACAAACAAGACTTTGGTTTGAAACCAATGAATTGCCCAGGGCACTGCTTGATGTTTCAGCACAGGGTTAGATCATATAGAGAACTCCCACTTCGCTTCGCTGATTTTGGGGTTTTGCATCGGAATGAGGCTAGTGGTGCCCTGAGTGGATTAACACGTGTCAGGAGATTTCAGCAGGATGATGCACATATTTTCTGCAGGGAGTCTCAGATAAAGGAAGAAGTCAGAAAAGCCTTGAATTTCATCAATTATGTTTATGAAGTTTTTGGTTTCACATATGAGCTGAAACTTTCAACGAGGCCAGAGAAATACCTAGGAGAGTTGGCAACATGGGAGAAGGCTGAAAACGCTCTTAAAGAAGCTTTGGACGAGTTTGGCAAGCCTTGGCAGTTGAATGAAGGGGATGGTGCATTCTATGGACCTAAGATAGACATCAGCGTATCTGATGCATTGAGTCGAAAATTCCAGTGTGCAACTTTGCAGCTTGACTTCCAGCTTCCTGATCGATTTAAATTGGAATACTCAGCTGAGGATGAAGCCAAAATTGAGAGACCTGTTATGATTCACAGAGCCATTCTAGGATCTGTTGAGCGCATGTTTGCCATTCTTTTAGAGCACTACAAGGGTAAATGGCCCTTGTGGCTCAGTCCTCGTCAAGCAATTGTATGTCCTGTGTCAGAGAAATCACAAGCTTATGCACTGCAGGTGCGAGATCAGATCCACCAAGCAGGATATCACGTTGATGCTGATACAACTGATCGGAAGATTCAGAAGAAGGTACGGGAAGCTCAATTAGCGCAGTACAACTACATCTTGGTTGTTGGAGAGGAGGAAGCTAATACAGGACAGGTGAGTGTACGGGTTAGAGATAAAGCAGACCATAGCGTTATGAGTATTGAGAATCTACTCAAACACTTCAGCGACGAAGTTGCAGCTTTTCATTGA 2148 0.459 MLCSLIRLRRYAAASPSLLLHHNHHNNRFYSSPPPPPPSAMVAHAKDDAYLTAAIPKRISMFEAIQAEQRTLRLTLSPDPIKVTLPDGSVRDAKKWQTTPLDVARDISKNLAANALIAKVNGVLWDMARPLEEDCELQIFKFNDDEGRDTFWHSSAHILGQSLETEYGCKLCIGPCTTRGEGFYYDAFYGDLGLNDDHFKQIEAGALKAAAEKQPFERIEVTRDQALEMFSENKFKIEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKAIACLKASSAYWRGDKDRESLQRVYGISYPDQKSLKEYLHRLEEAKKYDHRILGVKQELILHHEWSPGSWFFLPHGARIYNKLMDFIRNQYRDRGYQEVISPNVFNMELWEKSGHAANYREDMFVFEIDKQDFGLKPMNCPGHCLMFQHRVRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCRESQIKEEVRKALNFINYVYEVFGFTYELKLSTRPEKYLGELATWEKAENALKEALDEFGKPWQLNEGDGAFYGPKIDISVSDALSRKFQCATLQLDFQLPDRFKLEYSAEDEAKIERPVMIHRAILGSVERMFAILLEHYKGKWPLWLSPRQAIVCPVSEKSQAYALQVRDQIHQAGYHVDADTTDRKIQKKVREAQLAQYNYILVVGEEEANTGQVSVRVRDKADHSVMSIENLLKHFSDEVAAFH* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0997 715 PANTHER THREONINE--TRNA LIGASE, CYTOPLASMIC 44 714 - -
Lja2g0997 715 SMART tRNA_SAD_4 249 298 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lja2g0997 715 Hamap Threonine--tRNA ligase [thrS]. 146 713 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lja2g0997 715 SUPERFAMILY ThrRS/AlaRS common domain 143 320 IPR018163 GO:0000166
Lja2g0997 715 SUPERFAMILY Class II aaRS and biotin synthetases 322 605 IPR045864 -
Lja2g0997 715 Pfam Anticodon binding domain 620 708 IPR004154 -
Lja2g0997 715 Gene3D - 144 301 - -
Lja2g0997 715 PRINTS Threonyl-tRNA synthetase signature 586 599 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lja2g0997 715 PRINTS Threonyl-tRNA synthetase signature 542 570 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lja2g0997 715 PRINTS Threonyl-tRNA synthetase signature 613 625 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lja2g0997 715 PRINTS Threonyl-tRNA synthetase signature 408 436 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lja2g0997 715 PRINTS Threonyl-tRNA synthetase signature 441 464 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lja2g0997 715 PANTHER THREONINE-TRNA LIGASE 44 714 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lja2g0997 715 CDD ThrRS_core 322 618 IPR033728 -
Lja2g0997 715 Gene3D Bira Bifunctional Protein; Domain 2 302 610 IPR045864 -
Lja2g0997 715 Gene3D - 611 714 IPR036621 -
Lja2g0997 715 ProSiteProfiles TGS domain profile. 79 141 IPR004095 -
Lja2g0997 715 SUPERFAMILY TGS-like 81 141 IPR012676 -
Lja2g0997 715 CDD TGS_ThrRS 81 146 - -
Lja2g0997 715 Pfam tRNA synthetase class II core domain (G, H, P, S and T) 399 608 IPR002314 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Lja2g0997 715 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 347 613 IPR006195 -
Lja2g0997 715 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 249 298 IPR012947 GO:0004812|GO:0005524|GO:0043039
Lja2g0997 715 SUPERFAMILY Class II aaRS ABD-related 606 711 - -
Lja2g0997 715 CDD ThrRS_anticodon 618 707 - -
Lja2g0997 715 Pfam TGS domain 81 141 IPR004095 -
Lja2g0997 715 TIGRFAM thrS: threonine--tRNA ligase 152 709 IPR002320 GO:0004829|GO:0005524|GO:0005737|GO:0006435
Lja2g0997 715 Gene3D - 79 140 IPR012675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0997 Lja-Chr2 9397504 9406422 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0997 K01868 - gmx:100812652 1311.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0997 2 9397504 9406422 Lja2g0997 2 9397504 9406422 ECH