Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0994 ATGAACCCTTTCTCCTCCGGCACGCGGCTCAGGGATATGATTCGAGCCATACGTGCTTGCAAGACTGCAGCAGAAGAACGTGCTGTTGTAAGAAAAGAATGTGCTGCCATTCGTGATTCAATAAATGCAAACGATCATGACTATAGGCATCGAAATCTGGCTAAGCTAATGTTCATCCATATGCTTGGTTATCCCACACATTTTGGTCAAATGGAGTGCCTCAAGTTGATAGCATCTCCAGGATTTCCAGAGAAGAGAATAGGTTATCTTGGCCTCATGTTGCTTCTTGATGAAAGGCAAGAAGTTCTGATGTTGGTCACCAATTCTGTAAAACAAGATCTTAATCACACAAATCAGTATATTGTGGGACTTGCACTTTGTGCTTTAGGAAACATTTGTTCAGCAGAAATGGCTCGGGATCTTGCACCAGAGGTTGAGAGATTGCTGCAATTTCGTGATCCAAATATTCGGAAGAAGGCAGCATTATGCTCTATAAGAATCATAAAGAAAGTTCCAGACTTGGCAGAAAATTTTATCAATCCTGCTACTTCCTTACTTAGGGAGAAACATCATGGAGTTTTGATTGCTGGTGTTCAGCTTTGTGCAGATCTGTGTAAAACTAGCACTGAAGCTCTTGAACATATTAGAAAGAAATGCACAGATGGTTTGGTCAGAACTCTTAAAGATCTAGCGAACAGTCCTTATTCACCAGAGTATGATATTGCTGGCATCACAGACCCGTTTCTCCACATCAGATTGCTTAAACTTTTGCGAGTGTTGGGGGAAGGTGATGCTGATGCTAGTGACTCCATGAATGACATACTTGCCCAGGTGGCTACAAAAACCGAGTCCAATAAAGTTGCAGGGAATGCCATTTTATATGAGTGTGTTCAAACAATTATGAGCATTGAAGATAATGGGGGCTTACGCGTACTTGCCATCAATATCCTGGGAAGGTTCTTATCAAACCGTGACAACAATATCAGATATGTGGCGTTAAACATGCTAATGAGGGCTGTAACTGCTGATGCTCAGGCAGTGCAGAGGCACCGTGCAACGATCCTAGAATGTGTGAAGGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTGTTTACGTTCTGGTGAATGAAACTAATGTGAAGCCATTAGCGAAAGAGCTTATAGATTATCTGGAAGTTAGTGATCCTGATTTCAGAGGAGACCTTACCGAAAAAATTTGCTCCATAGTTGCAAAGTTTTCGCCAGAGAAGATCTGGTACATTGATCAGATGCTCAAAGTTCTGTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTGTGGTATGCCTTAATTGTGGTGATAAGCAATGCTTCTGAGCTTCATGGATATACAGTAAGAGCATTATACCGGGCATTTCAAACATCTGCTGAACAGGAGACTCTAGTTCGAGTTACGGTGTGGTGCATTGGGGAGTATGGTGACATGTTAGTCAATAATGTTGGAATGCTTGACATAGAAGATCCAATAACAGTGACCGAGTCAGATGCGGTGGATGTTATAGAGATTGCTATAAAACGTCATGCATCAGATCTTACCACAAAAGCAATGGCTCTGGTTGCCCTATTAAAGCTCTCTTCACGTTTCCCTTCATGTTCAGAGAGGATCAGGGAAATTGTTGTTCAGTTCAAAGGGAATCTTGTGCTAGAATTGCAGCAGAGAGCTATTGAATTTAATTCAGTCATTGCAAAGCATCAAAATATTAGGTCTACACTTGTAGAAAGGATGCCGGTTTTGGATGAGGCCACTTTCGTTGGTAGGAGGGCTGGGTCTTTGCCAGGCACAGCTTCTACACCAACTGTACCTTCAGTTAGTATTCCAAATGGAGTAGTCAAACCTGTGGCTCCTCTTGTAGATCTACTCGATCTAAGTTCAGATGATGTTCCTGCACCTAGCTCATCTGGTGGTGATCTTCTTCAGGACCTTCTTGGTGTTGATATGTCAGGGGCATCACAACAATCTGGCACTGGTCAAGCTTCAAAAAGTGGCAAAGATGTTCTTCTGGATCTTTTATCTATCGGATCACCTTCTGCTCCAAGCAGCTCATCTACAGTAGACATCTTATCCTCCAATACAAGTAACAAAGCACCAGCTTCACCTTTGGATGATCTTTCATCACTTTCACTGTCTTCAAGAGAAACTTCAAATGCTGCTCCTATGATGGATTTATTGGATAGTTTTTCTCCCAGCCCACCAACAGAAAACAACGGACCAGTTTATCCATCTGTGACTGCATTTGAGAGCAGCTCCTTGAAGTTGACATTCAATTTTTCAAAGCAACCAGGAAACCCACAAACAACATCTATCCAAGCTACCTTTACGAACTTGTCCCCTAATACGTATACAGATTTTGTTTTCCAGGCAGCCGTTCCTAAGTTTCTTCAATTGCACTTAGATCCAGCTAGCAACAATACTCTCCCTGGAAATGGGTCCATAACTCAAACTTTGAGAGTTACAAATAACCAACATGGAAAGAAATCTCTTGTCATGCGCATAAGGATAGCATACAAGATAAATGGCAAAGATGCACTGGAGGAAGGACAAATCAGTAATTTTCCTCGTGATTTATGA 2613 0.4191 MNPFSSGTRLRDMIRAIRACKTAAEERAVVRKECAAIRDSINANDHDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASPGFPEKRIGYLGLMLLLDERQEVLMLVTNSVKQDLNHTNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIKKVPDLAENFINPATSLLREKHHGVLIAGVQLCADLCKTSTEALEHIRKKCTDGLVRTLKDLANSPYSPEYDIAGITDPFLHIRLLKLLRVLGEGDADASDSMNDILAQVATKTESNKVAGNAILYECVQTIMSIEDNGGLRVLAINILGRFLSNRDNNIRYVALNMLMRAVTADAQAVQRHRATILECVKDSDASIRKRALELVYVLVNETNVKPLAKELIDYLEVSDPDFRGDLTEKICSIVAKFSPEKIWYIDQMLKVLSEAGNFVKDEVWYALIVVISNASELHGYTVRALYRAFQTSAEQETLVRVTVWCIGEYGDMLVNNVGMLDIEDPITVTESDAVDVIEIAIKRHASDLTTKAMALVALLKLSSRFPSCSERIREIVVQFKGNLVLELQQRAIEFNSVIAKHQNIRSTLVERMPVLDEATFVGRRAGSLPGTASTPTVPSVSIPNGVVKPVAPLVDLLDLSSDDVPAPSSSGGDLLQDLLGVDMSGASQQSGTGQASKSGKDVLLDLLSIGSPSAPSSSSTVDILSSNTSNKAPASPLDDLSSLSLSSRETSNAAPMMDLLDSFSPSPPTENNGPVYPSVTAFESSSLKLTFNFSKQPGNPQTTSIQATFTNLSPNTYTDFVFQAAVPKFLQLHLDPASNNTLPGNGSITQTLRVTNNQHGKKSLVMRIRIAYKINGKDALEEGQISNFPRDL* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0994 870 Pfam Adaptin N terminal region 27 578 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lja2g0994 870 Pfam Adaptin C-terminal domain 755 867 IPR008152 GO:0006886|GO:0016192
Lja2g0994 870 SUPERFAMILY ARM repeat 25 593 IPR016024 -
Lja2g0994 870 Gene3D - 2 594 IPR011989 -
Lja2g0994 870 SUPERFAMILY Clathrin adaptor appendage domain 728 869 IPR013041 -
Lja2g0994 870 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 752 867 IPR008153 -
Lja2g0994 870 PANTHER AP-1 COMPLEX SUBUNIT GAMMA 5 870 - -
Lja2g0994 870 MobiDBLite consensus disorder prediction 690 727 - -
Lja2g0994 870 Gene3D - 729 869 - -
Lja2g0994 870 PIRSF AP1_gamma 6 870 IPR017107 GO:0005794|GO:0016192|GO:0030121
Lja2g0994 870 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 5 870 - -
Lja2g0994 870 SMART alpha_adaptinc2 749 867 IPR008152 GO:0006886|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0994 Lja-Chr2 9366176 9379731 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0994 K12391 - gmx:100802164 1505.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0994 2 9366176 9379731 Lja2g0994 2 9366176 9379731 ECH