Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0984 ATGGCGGCAGAGAACGTAGCAGCTGATTTACCAGTCAAGAGGCAGCGAGAAGAAGAAGAAGAAGACCAACAAAATGGCCTCTCTCAGAACGATTCTTCCACGCCTCAAGGGCTATCTGCTGTTATTCCTGGATGGTTCTCTGAAATTAGCCCAATGTGGCCTGGGGAAGCACACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGATTATCAGAATGTCATGGTCTTCCAGTCATCCACGTATGGCAAGGTTCTTGTTTTGGATGGAGTCATTCAGCTCACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTCTGTTCTATTCCAAATCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTGCGGGAAGTATCACGTCATTCGTCAGTAGAAAAGATCGACATTTGTGAAATAGACAAGATGGTTGTTGATGTCTCCAAAGAGTTTTTCCCTGATATTGCTGTAGGTTTTGAGGACCCACGTGTCTCCCTTCATATCGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGATCTTATGATGCAGTAATAGTGGATTCATCCGACCCTATAGGTCCTGCTCAAGAGCTTTTTGAAAAGCCTTTCTTTTCATCGGTTGCAAGGGCTCTTCGTCCTGGAGGTGTTGTGTGTACTCAAGCAGAAAGTATATGGCTCCATATGCATATCATTGAGGACATTGTGGCAAACTGTCGCCAGATATTCAAAGGTTCTGTCAACTATGCTTGGACCACCGTTCCCACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGTCCTTCTGTTGATTTCAAGCATCCAGTGAATCCTATAGATGAGGATGATAGTCAGCAGTCAGCAAGACCATTGAAATTTTACAACCGTGAGATTCATTCAGCTGCTTTCTGTTTGCCATCTTTTGCTAAGAGAGCTATTGGTGCTAAAGCAAATTGA 1002 0.4431 MAAENVAADLPVKRQREEEEEDQQNGLSQNDSSTPQGLSAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVSRHSSVEKIDICEIDKMVVDVSKEFFPDIAVGFEDPRVSLHIGDGVAFLKAAPEGSYDAVIVDSSDPIGPAQELFEKPFFSSVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDEDDSQQSARPLKFYNREIHSAAFCLPSFAKRAIGAKAN* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0984 333 Pfam Spermine/spermidine synthase domain 101 288 - -
Lja2g0984 333 PANTHER SPERMIDINE/SPERMINE SYNTHASE 1 333 IPR001045 GO:0003824
Lja2g0984 333 Pfam Spermidine synthase tetramerisation domain 44 98 IPR035246 -
Lja2g0984 333 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 122 135 IPR030373 -
Lja2g0984 333 Hamap Polyamine aminopropyltransferase [speE]. 44 329 IPR001045 GO:0003824
Lja2g0984 333 PANTHER SPERMIDINE SYNTHASE-RELATED 1 333 - -
Lja2g0984 333 Gene3D Vaccinia Virus protein VP39 96 333 IPR029063 -
Lja2g0984 333 MobiDBLite consensus disorder prediction 1 36 - -
Lja2g0984 333 Gene3D Spermidine synthase, tetramerisation domain 37 95 IPR037163 -
Lja2g0984 333 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 43 280 IPR030374 -
Lja2g0984 333 CDD AdoMet_MTases 121 232 - -
Lja2g0984 333 TIGRFAM speE: spermidine synthase 45 323 IPR001045 GO:0003824
Lja2g0984 333 PIRSF Spermidine_synth 33 333 IPR030668 GO:0006595
Lja2g0984 333 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 41 328 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0984 Lja-Chr2 9247311 9251168 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0984 K00797 - gmx:100792107 583.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0984 2 9247311 9251168 Lja2g0984 2 9247311 9251168 ECH