Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0982 ATGGCGGATTCCGCCGCTTCTCCCGCCGCAACCCTAGACTCCGGACCTCCGAACTCCCTCCCCGATCCACCTCCTCACTCCCAACCCTCATCTACGCCACTCGCCCCCAACCCTAATCCCAATCCACCCGCACCGTCGCTGCCTCCGCCTCCTACTCTCCTCTATTCGGCGGGGGCACCGCCGCAGCTCCCCACCGTCCTTCCCCCATCATTCCGCCCGCTGGCTCCGCAATTCTCTCCCCTGCCCAACCCCGGCGCATACCAAAACCCTACCGTTCCACCTCCCGGTGTGGCCACCGCAGCCGCGCAGCCTCCGTCGCAGATGCCGCATATGCAACCGATGATGTCGTATCAGGTTCCTCCCCGAGCTTATGCACCGATGCCGAATGGTTACGCCGCGCCTCCACAAGGAACCGTTCCTCCCACGGGTATTCCACGTTACCCCCCACCTTATGGAACTATGCTCCGGCCGGTATATCCTCCACGCCCTCATGGAGCACTTAATGTTGCTCCAGTATCACGCCCTCCTGTTGCAGGGATCCCTGCAGTTCGCCCTATTATTCCTCCTGTTGTCAGACCTATGATTGCTCCCAGTGTTACTCCAGCTGAGAAGCAACAAATCACAGTTTACATTAGGATTGCACCAACTGTGGAGAATGAGTTCGTGCTTTCTCTCATTCAATTGTGTGGAAATATCAAGAGCTGGAAGCGTACTCAATATTTATCTAGTGGAACTCCTAAAAGTTTTGGGTTTTATGAATTTGAGTCTGCTGAAGGGGTTCTTCGGGCTATGCGCCTCCTTTCTAAATTGAATATTGATGGGCAAGAACTAGTGGTCAATGTGGATGAAGCTATGAAACAATATCTGGAGCGGTATGTTCAAAGAAAGACTGAGAACTCGATTAAAAAGGAAGCTCAGACAGCTGGAGATGAAAAAGATGATGAAGGTACCAAACCTTCTGATGCAACTGATGCTGCAAAACCTGATGTGGACCCCTCAAATAAAGAGGATAATGATTCAGGGAACAAGGAATCACATGATGTGAAAAACTTTGGGATTGTCACGGATGAAGATAGGGAAGCTGATCGAGATGCTTTAGTAAAGATTGCGAATATGATAGAGGAGAGGTTGATGACAAGACCTTTGCCTCCACCACCTGCACTGCCAACCGTCGATGGTTCTGTGAGTTCAGTTCAAGAACAACCTGCTAAGACAAGAGATGGAGAGTCTGATGTGGATACGAAGAAGAATGAAACAGGTGAAGATAAAAATGATAAAGAGGCAAACAGTGATAACCAACCAACTGGTGAACATGATAGACCCGATACCCCTGATAGAAGGCATGATAGGAAAAGCAGAGAGAGAGACCACCGAGATAGGGAACTTAAACGAGAAAAAGAAAGGGAACTTGAAAGATATGAAAAAGAAGCTGAGCGGGAACGTATTCGGAAAGAGAGGGAACAGAGACGAAGGACTGAGGAGGCTGAGCGTCAGTATGAATCATATTTGAAGGAATGGGAGTATAGAGAAAAAGAGAAAGAAAAAGAACGTCAGTGTGAAAAAGAGAAGGAGAAGGAAAGGGAACGCAAACGGAGAAAGGAGATACTTTATGATGAAGAGGATGAAGATGAGGATTCTAGGAAGAGGTGGCGTAGAAATGTACTAGAGGAGAAGAGGAAGAGGAGGGTGCGTGAAAAGGAAGATGACTTGGCTGACAAACAAAAAGAAGAGGAAGAAATTGTTGATGCCAAGAAGAGGGCTGAGGAGGATCAACGACAGAAGCAGCAGAGAGATGCTTTAAAGCTATTGTCAGAGCATGTAGTAAACAGTGGTGAGGAAACTATGGCTACTGAAGAGATTGCTAAGGAAGTAAAATATATTGATGCTGAACAAGATACTGTAGCTCATTATAGTCGTGAAGGTCATATTGGTGATGGCAATTCAGTAAATGCTATCCACGATGAATCTGCCATGGCATCTGTTGGTACAACTGATACACAGTCAGGTGGAAATGGTCCTTTGAAGAAGTTAGGATTTGGTCTAGTTGGCTCGGGGAAAAGAGCAGCTGTTGCTTCTGCTTTCCATGAAGAGGAGGAGGATGAGGCACACAAGGATAAAAAATTGAGGCCTTTGGTTCCAATTGATTACTCAACAGAGGAATTGCAGGCTGTTCAACCTACTATTTCTGGGTCAACACCGCCAAATTTGGTCGCAGCAGCAGAATTTGCAAAGCGTATATCCAGTACCAATTTCAAGGAAGATAAGCCGGATGGAGAACGGGATAGAAGTAGGCGATCAAATGAGAAGTCTAACCACCGGGACAGGGACAGGAAAGATGAAGATGGCACTCACAACAGGGATGAAAACAAGGATAAATTTCCTGACCGTGCTAAAGATCGAGGTCATGGGTTTGAGAAATCTAAAACTCATGATAACAGGAGGCTTTTGGATGCAAAACAGTTAATTGATATGATACCAAAGACCAAGGAGGAGTTGTTTTCATATGAGATAGACTGGACAGTGTATGACAAGCATCAGTTGCATGAAAGAATGAGACCGTGGATTTCTAAGAAAATCCAAGAGTTTTTGGGGGAAGAAGAAAATACATTGATCGATTATATTGTTTCCAGTACACAAGAACATGTGAAAGCGTCCCAAATGCTTGAGCGTCTTCAGATCATTTTAGATGAGGAAGCTGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATCTTTGAAATAAAAAGGGTAGAGACAGGGCTTGCTTTGAGGTCAAAATCATGA 2784 0.4619 MADSAASPAATLDSGPPNSLPDPPPHSQPSSTPLAPNPNPNPPAPSLPPPPTLLYSAGAPPQLPTVLPPSFRPLAPQFSPLPNPGAYQNPTVPPPGVATAAAQPPSQMPHMQPMMSYQVPPRAYAPMPNGYAAPPQGTVPPTGIPRYPPPYGTMLRPVYPPRPHGALNVAPVSRPPVAGIPAVRPIIPPVVRPMIAPSVTPAEKQQITVYIRIAPTVENEFVLSLIQLCGNIKSWKRTQYLSSGTPKSFGFYEFESAEGVLRAMRLLSKLNIDGQELVVNVDEAMKQYLERYVQRKTENSIKKEAQTAGDEKDDEGTKPSDATDAAKPDVDPSNKEDNDSGNKESHDVKNFGIVTDEDREADRDALVKIANMIEERLMTRPLPPPPALPTVDGSVSSVQEQPAKTRDGESDVDTKKNETGEDKNDKEANSDNQPTGEHDRPDTPDRRHDRKSRERDHRDRELKREKERELERYEKEAERERIRKEREQRRRTEEAERQYESYLKEWEYREKEKEKERQCEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRNVLEEKRKRRVREKEDDLADKQKEEEEIVDAKKRAEEDQRQKQQRDALKLLSEHVVNSGEETMATEEIAKEVKYIDAEQDTVAHYSREGHIGDGNSVNAIHDESAMASVGTTDTQSGGNGPLKKLGFGLVGSGKRAAVASAFHEEEEDEAHKDKKLRPLVPIDYSTEELQAVQPTISGSTPPNLVAAAEFAKRISSTNFKEDKPDGERDRSRRSNEKSNHRDRDRKDEDGTHNRDENKDKFPDRAKDRGHGFEKSKTHDNRRLLDAKQLIDMIPKTKEELFSYEIDWTVYDKHQLHERMRPWISKKIQEFLGEEENTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKRVETGLALRSKS* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0982 927 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 33 927 - -
Lja2g0982 927 MobiDBLite consensus disorder prediction 692 711 - -
Lja2g0982 927 SMART pwi_2 843 916 IPR002483 GO:0006397
Lja2g0982 927 MobiDBLite consensus disorder prediction 1 111 - -
Lja2g0982 927 SMART rrm1_1 208 280 IPR000504 GO:0003723
Lja2g0982 927 CDD RRM_RBM25 208 289 IPR034268 -
Lja2g0982 927 Coils Coil 556 605 - -
Lja2g0982 927 Pfam PWI domain 850 913 IPR002483 GO:0006397
Lja2g0982 927 PRINTS Proline rich extensin signature 15 27 - -
Lja2g0982 927 PRINTS Proline rich extensin signature 118 135 - -
Lja2g0982 927 PRINTS Proline rich extensin signature 64 85 - -
Lja2g0982 927 PRINTS Proline rich extensin signature 98 114 - -
Lja2g0982 927 PRINTS Proline rich extensin signature 35 51 - -
Lja2g0982 927 Coils Coil 456 529 - -
Lja2g0982 927 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 33 927 - -
Lja2g0982 927 SUPERFAMILY RNA-binding domain, RBD 197 284 IPR035979 GO:0003676
Lja2g0982 927 MobiDBLite consensus disorder prediction 561 597 - -
Lja2g0982 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Lja2g0982 927 Gene3D PWI domain 806 922 - -
Lja2g0982 927 SUPERFAMILY PWI domain 848 913 IPR036483 GO:0006397
Lja2g0982 927 MobiDBLite consensus disorder prediction 377 497 - -
Lja2g0982 927 MobiDBLite consensus disorder prediction 300 356 - -
Lja2g0982 927 MobiDBLite consensus disorder prediction 509 548 - -
Lja2g0982 927 MobiDBLite consensus disorder prediction 17 80 - -
Lja2g0982 927 MobiDBLite consensus disorder prediction 404 497 - -
Lja2g0982 927 ProSiteProfiles PWI domain profile. 830 927 IPR002483 GO:0006397
Lja2g0982 927 MobiDBLite consensus disorder prediction 748 810 - -
Lja2g0982 927 Gene3D - 201 315 IPR012677 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0982 K12822 - gmx:100809428 1109.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0982 2 9232163 9238192 Lja2g0982 2 9232163 9238192 ECH