Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0967 ATGCTAAAAATGAGTGGCTTGAGTTTCAGGTTCTTCTCATACATGCTTCTCATTGTGCTTCTAATTTGGTCTTCCAATTTTGAAACCTGCATTGCAAGAAGAGGCAAGCATTGGAGGCAAAGCAGAACTGTCTCAGCTTCTCTGTTTAAGAAGAAAGGGAACAGTCATGGCAATAGTCACAATCAACATGGTGGAGGAGGATCATCATCACATTCAAAACCAAAGCCTCCTCCTCCAACACATAAAAAAACTCCATCATCACCACTATTTCCCAAGCCAAAAGTAGATCCTCCATCAACACCGCCGTCAAATGATTACAATGGAGGGAGCTCAACCATGTTCAATGTGCTAGATTTTGGAGCTAAGGGTGATGGTAGAACTGATGACACAAAGGCATTCCAAGCCACATGTGCAATGGCATGTAAGGTAGAGGCATCAACCATGGTGGTTCCAGCAGCTTACGTCTTCTATGTGGGACCTATTTCATTCTCGGGTCCATATTGTAAACCCAACATTGTTTTTCAGCTTGATGGTACAATTATTGCTCCAACAAACTCCAATGCTTGGGGTGGAGGGTTGCTACAGTGGCTTGAATTCTCAAAGCTTGTGGGAATTACCATTCAAGGAAAAGGTGTCATTGATGGAAGAGGCTCTGTCTGGTGGCAAGATTTCCCATATGATGATCCCATAGATGATGAAGAAAAGCTTATAGTTCCCCTAAATCACACACAGAAGCCGTCACTGCCGGTACAAAATGAGATGGGAAGACAAATGCCAGCAGTCAAACCAACTGCACTAAGGTTTTATGGGAGTTTTAGTCCAACAGTGACAGGCATAACAATTCAAAACAGTCCTCAGTGCCATCTCAAGTTTGATAACTGCAATGGGGTCCTGGTCCATGATGTGAGCATTTCATCTCCTGGTGACAGCCCTAACACTGATGGAATTCACCTTCAGAATTCCAAAGATGTGTTGATCCACAGCAGCAAAATGGCATGTGGAGATGACTGTATTTCAATACAAACTGGATGCTCAAATGTGTATGTACACAATGTCAACTGTGGTCCAGGGCATGGAATCAGCATTGGAAGTTTAGGAAAGGATAACACCAGAGCCTGTGTCTCAAACATTACCATCAGAGATGTCAACATGCACAACACAATGAATGGTGTCAGAATCAAAACATGGCAGGGTGGATCAGGGTCTGTGCAGGGGGTACTATTCTCAAACATACAAGTTTCTGAAGTTCAGCTTCCGATTGTGATTGACCAGTTCTACTGTGACAAAAGATCATGCACAAACCACACATCAGCAGTGGCATTAGCAGGAATCAACTATGAAGGAATAAAGGGGACTTACACGGTGAAGCCGGTGCATTTTGCCTGCAGTGATAGCTTGCCGTGTGTGGACGTTTCGTTGACCTCGGTTGAGTTAAAACCGGTTCAAGAACAATACCACCTCTATGAGCCATTCTGCTGGCAGACTTATGGCCAATTAATGACTCCCACAACCCCTCCAATTGATTGTATACAGATTGGGAAGCCATCAAGCAACCGGATTCAAACCAATCATGATATATGTTAG 1584 0.4375 MLKMSGLSFRFFSYMLLIVLLIWSSNFETCIARRGKHWRQSRTVSASLFKKKGNSHGNSHNQHGGGGSSSHSKPKPPPPTHKKTPSSPLFPKPKVDPPSTPPSNDYNGGSSTMFNVLDFGAKGDGRTDDTKAFQATCAMACKVEASTMVVPAAYVFYVGPISFSGPYCKPNIVFQLDGTIIAPTNSNAWGGGLLQWLEFSKLVGITIQGKGVIDGRGSVWWQDFPYDDPIDDEEKLIVPLNHTQKPSLPVQNEMGRQMPAVKPTALRFYGSFSPTVTGITIQNSPQCHLKFDNCNGVLVHDVSISSPGDSPNTDGIHLQNSKDVLIHSSKMACGDDCISIQTGCSNVYVHNVNCGPGHGISIGSLGKDNTRACVSNITIRDVNMHNTMNGVRIKTWQGGSGSVQGVLFSNIQVSEVQLPIVIDQFYCDKRSCTNHTSAVALAGINYEGIKGTYTVKPVHFACSDSLPCVDVSLTSVELKPVQEQYHLYEPFCWQTYGQLMTPTTPPIDCIQIGKPSSNRIQTNHDIC* 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0967 527 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 9 517 - -
Lja2g0967 527 MobiDBLite consensus disorder prediction 50 108 - -
Lja2g0967 527 MobiDBLite consensus disorder prediction 72 100 - -
Lja2g0967 527 SMART pbh1 321 342 IPR006626 -
Lja2g0967 527 SMART pbh1 403 424 IPR006626 -
Lja2g0967 527 SMART pbh1 374 395 IPR006626 -
Lja2g0967 527 SMART pbh1 294 320 IPR006626 -
Lja2g0967 527 SMART pbh1 344 364 IPR006626 -
Lja2g0967 527 SUPERFAMILY Pectin lyase-like 112 525 IPR011050 -
Lja2g0967 527 Gene3D - 101 523 IPR012334 -
Lja2g0967 527 PANTHER - 9 517 - -
Lja2g0967 527 ProSitePatterns Polygalacturonase active site. 351 364 IPR000743 GO:0004650|GO:0005975
Lja2g0967 527 Pfam Glycosyl hydrolases family 28 143 223 IPR000743 GO:0004650|GO:0005975
Lja2g0967 527 Pfam Glycosyl hydrolases family 28 261 479 IPR000743 GO:0004650|GO:0005975
Lja2g0967 527 MobiDBLite consensus disorder prediction 50 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0967 Lja-Chr2 9092480 9097050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0967 1 527 Glycoside Hydrolase AT1G60590 63.603 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0967 - - gmx:100783813 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0967 2 9092480 9097050 Lja2g0967 2 9092480 9097050 ECH