Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0960 ATGCAAGAATTAGAGCATTGGAAGGAAGAGCTTTCTCGCCTATGGCTCACCGCTTCCGATTATCTTCGCCAGGTCCCACCCGAACAGCTCTACATCGCTGCTGCTATCGCGGTTTTCACAACCCTGCTTCTTCTCTCTCTACGGTTGTTCAAGCGTGCAAAAACTAACACTGTTGTGTTGACGGGGCTTACTGGGAGTGGCAAAACCGTTCTCTTCTATCAGCTTAGGGATGGCTCTACTCATCAGGGTACTGTTACATCTATGGAACCTAATGAAGGCACTTTTATTCTTCACAGTGAGACAACAAAGAAGGGCAAGGTAAAACCTGTTCATATTGTTGATGTTCCTGGCCATTCTCGACTTCGACCCAAACTGGATGAGTACTTGCCTCAAGCAGCTGGCGTAGTCTTTGTGGTTGATGCTGTTGACTTCTTACCAAATTGCCGTGCTGCTTCAGAGTACCTATATGATATATTGACTAAGGGAAGTGTGGTAAAGAAGAAGATCCCACTGCTTATTCTCTGCAACAAAACAGACAAAGTCACTGCTCATACAAAGGAATTTATCCGCAGACAGTTGGAGAAGGAAATTGACAAATTACGGGCATCAAGAAGTGCAGTGTCAGATGCTGACGTTACAAATGAGTTCACGTTGGGGGTACCTGGTGAGGCATTTTCTTTTACCCAGTGCTGTAACAAAGTTACCACTGCAGATGCTTCTGGTTTAACTGGAGAGATATCTCAGCTGGAAGAGTTCATCAGAGAATATGTGAAGCCATAA 780 0.45 MQELEHWKEELSRLWLTASDYLRQVPPEQLYIAAAIAVFTTLLLLSLRLFKRAKTNTVVLTGLTGSGKTVLFYQLRDGSTHQGTVTSMEPNEGTFILHSETTKKGKVKPVHIVDVPGHSRLRPKLDEYLPQAAGVVFVVDAVDFLPNCRAASEYLYDILTKGSVVKKKIPLLILCNKTDKVTAHTKEFIRRQLEKEIDKLRASRSAVSDADVTNEFTLGVPGEAFSFTQCCNKVTTADASGLTGEISQLEEFIREYVKP* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0960 259 TIGRFAM small_GTP: small GTP-binding protein domain 54 195 IPR005225 GO:0005525
Lja2g0960 259 Coils Coil 190 210 - -
Lja2g0960 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 205 IPR027417 -
Lja2g0960 259 PANTHER TRANSFERRIN 15 259 - -
Lja2g0960 259 CDD SR_beta 56 256 IPR019009 -
Lja2g0960 259 Gene3D - 50 257 IPR027417 -
Lja2g0960 259 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 15 259 IPR019009 -
Lja2g0960 259 Pfam Signal recognition particle receptor beta subunit 54 234 IPR019009 -
Lja2g0960 259 ProSiteProfiles small GTPase Arf family profile. 48 253 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0960 1 259 Miscellaneous Gene Families AT5G05670 71.154 2.84e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0960 K12272 - gmx:100800572 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0960 2 9036145 9038760 Lja2g0960 2 9036145 9038760 ECH