Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0950 ATGAAGAGGAACACAAGTTCTTCCCTACTCTTTTTCATGTTCTTGTTGGTGAATGTCTTTGTCACCTTCACTATAACTTCTGTGGAGGCAAGGAAGACTAATAACACCATCAAGAAAAAACTTCATAAAGGTCACAAAAATAGTAGCAATGGCCACACTAGAGGCTCACATGTTCCACGTCCACCGCCAGCTCCTCTTCCTCATCATGGTCCTCATCCAAACCAAGTGAACACTTTTGATATTATGTATTTTGGCGCCAGGGGAAATGGAATTTCTGATGATTCAGAGGCACTTCTTGCTGCATGGAATGGTGCTTGCAAAGTTGCTGGAGCTACAGTTAAAGTTCCACCACAACTCAAGTTTCTCATCAAGCCTGTTACTTTCCAAGGCCCTTGTATGCCTGGCCTTACTCTTCAGATAGATGGAACTGTATTGGCTCCTGCTGAACCATCATCCTGGGCAAAATCCAATTTGTTTCAGTGGATAAATTTTAAATGGTTGCAGAACTTCACCATCAAAGGCTCTGGTACTGTTGATGGCCAAGGCTTCAACTGGTGGGGCACTTCATCAGAACTTTATGATATGCAGAAAAGCTACTCTGAAAATCTTGTAATGAAGCCAACTGCTATAAGATTTTACTCTAGCAACTTTGTGACAGTTCAAGATATTAGAATCATAAACAGTCCTCTGTGCCATCTAAAATTTGACAACTCAAAGGGCATCAAAGTTAACAACATCACAATATCTTCCCCTGGGAACAGCCCAAATACTGATGGCATTCACTTGCAAAACACTCAGGATGTGGAAATTCAGCATTCTGATATTGGAACTGGAGATGACTGTGTGTCCATCCAAACCGGTTGCTCTAATATTCATGTCCACCACATTAAATGTGGCCCTGGACATGGTATAAGTTTAGGAGGATTAGGAAAAGACAAGAGTGTGGCATGCGTCTCTGACATCATTGTTGAGGATATCTCAATGAAAAATACTATGTATGGAGCAAGGATCAAAACATGGCAGGGAGGCATTGGTATGGTTAAAAATGTGACATTTTCCAGAATCAGAATCTATGATGTTCTGTTTCCAATAATGATAGATCAATACTACTGTGACAAGCAAATGTGCAAGAACCAGACAGGAACAGTTGTTATTTCTGGTGTGAATTTTGATCAAATAAGTGGAACTTATGCAGTGCAGCCTGTGCATCTAGCCTGCAGCAATTTCATACCATGCACAGATGTTGATTTAACTGATATTCAACTTAGGCCCTCTCTCAAATATCGAGGTTCACAACAAGCTACGTGCTGGAACTCTTATGGTAAATCACAAGGCCCCTTGGTGCCAGCAAGCATTGATTATTGTTTGAGAAGTGGTGGTGGATTGATCAAGAGGATAGCAAGGTCACATGATTATAGTGCATGTTACAGATAA 1434 0.41 MKRNTSSSLLFFMFLLVNVFVTFTITSVEARKTNNTIKKKLHKGHKNSSNGHTRGSHVPRPPPAPLPHHGPHPNQVNTFDIMYFGARGNGISDDSEALLAAWNGACKVAGATVKVPPQLKFLIKPVTFQGPCMPGLTLQIDGTVLAPAEPSSWAKSNLFQWINFKWLQNFTIKGSGTVDGQGFNWWGTSSELYDMQKSYSENLVMKPTAIRFYSSNFVTVQDIRIINSPLCHLKFDNSKGIKVNNITISSPGNSPNTDGIHLQNTQDVEIQHSDIGTGDDCVSIQTGCSNIHVHHIKCGPGHGISLGGLGKDKSVACVSDIIVEDISMKNTMYGARIKTWQGGIGMVKNVTFSRIRIYDVLFPIMIDQYYCDKQMCKNQTGTVVISGVNFDQISGTYAVQPVHLACSNFIPCTDVDLTDIQLRPSLKYRGSQQATCWNSYGKSQGPLVPASIDYCLRSGGGLIKRIARSHDYSACYR* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0950 477 SUPERFAMILY Pectin lyase-like 75 452 IPR011050 -
Lja2g0950 477 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 16 463 - -
Lja2g0950 477 SMART pbh1 288 308 IPR006626 -
Lja2g0950 477 SMART pbh1 347 368 IPR006626 -
Lja2g0950 477 SMART pbh1 318 339 IPR006626 -
Lja2g0950 477 SMART pbh1 238 264 IPR006626 -
Lja2g0950 477 SMART pbh1 265 286 IPR006626 -
Lja2g0950 477 Gene3D - 69 454 IPR012334 -
Lja2g0950 477 PANTHER - 16 463 - -
Lja2g0950 477 Pfam Glycosyl hydrolases family 28 111 438 IPR000743 GO:0004650|GO:0005975
Lja2g0950 477 MobiDBLite consensus disorder prediction 36 50 - -
Lja2g0950 477 MobiDBLite consensus disorder prediction 36 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0950 Lja-Chr2 8926825 8929726 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0950 1 471 Glycoside Hydrolase AT3G26610 57.620 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0950 K01213 - gmx:100803027 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0950 2 8926825 8929726 Lja2g0950 2 8926825 8929726 ECH