Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0928 ATGAAGTTCATGAAATTGGGATCTCGTCCTGATACTTTCTACACTGCAGAGGCAATAAGGTCAGTGTCTTCTGAAGTTTGCAGTGACCTTATAATTCAAGTGAGGGGAACTAGATATCTTCTTCACAAGTTTCCCCTGCTATCAAAATGTCTGCGCCTGCAAAAGCTATGCTCAGAATCTCCTGATTCTTCTCCACACCAAATAGTCCAGCTACCTGATTTCCCTGGAGGGATTGAAGCATTTGAGCTTTGTGCCAAGTTCTGCTATGGAATCACCATCACTCTAAGCCCTTACAACATTGTAGCTGCAAGGTGTTCTGCTGAGTATCTGCAAATGACCGAGGAGGTAGAGAAGGGGAACTTGATTCAAAAGCTTGATGTTTTCTTCAATTCATGCATCCTCCGTGGCTGGAAGGATTCTATAGTGAGTCTTCAAACCACAAAAGCATTGCATTTGTGGTCTGAAGACTTAGAAATTACAAGCAGATGCATTGAGGCTATTGCCTCAAAAGTTTTAAGCCACCCCACAAAGGTGAGTTTGTCTCATTCTCACTCCAGAAGGGTGAGGGATGATGTTTCATCTTGCAATGAGACTGAAAGTGTGAGACACAAATCAAACAAAGGATGGTGGGGTGAAGATTTAGCAGAATTGAGCATAGACCTTTATTGGAGAACCATGATAGCAATCAAATCTGGTGGTAAAGTTCCCTCAAATCTCATTGGAGATGCATTGAAAATCTATGCATCTAGATGGCTACCAAATATTACCAAGAATGGACATGTTAATAGAAAGCAAGTAGCTTCTGATAATTCTGACTTAGACTCAGCCAGTGAGATAACCTCAAAGCATCGTTTGCTTCTGGAATCAATAGTGAGCTTGCTTCCTGCAGAAAAAGGTGCTGTTTCTTGTAGCTTTCTTCTGAAGCTCTTGAAGGCATCCAATATTCTCAATGCTTCTTCATCTTCAAAGATGGAGTTAGCAACAAGAGTAGGGCTTCAACTTGAGGAAGCAACCGGGAATGATCTTTTGATACCCTCACTGTCTTACACAAATGACACACTGTATGATGTTGAATTGGTGATGACCATATTGGAACAGTTCATGGCACGAGGGCAGAGTCCCCCAACTAGTCCTCCAAGGTCTCTGATGACCTTTGAAAGAAGGAGGTCTCGTTCAGCAGAGAATATTAACTTTGAATTTCAGGAGAGTAGGAGATCCTCTTCAGCTTCTCACAGTTCAAAATTGAAGGTGGCAAAGCTTGTGGACAGGTATCTTCAAGAAATTGCAAGAGATGTAACTTTTTCCTTGTCCAAGTTCATTTCTCTTGCTGAAATTATACCAGATTTTGCAAGACAAGACCATGATGATCTCTACAGAGCTATTGACATTTATCTCAAGGCTCATCCAGAACTCAACAAGAGTGAAAGGAAAAGACTATGTAGAATACTTGACTGCAAAAAACTGTCAATGGAAGCTTGTATGCATGCAGCACAAAATGAGTTACTCCCTCTAAGGGTTGTTGTGCAAGTTCTCTTCTTTGAGCAAGCTAGAGCAGCAGCAACTAATGGTGACAAAGTGTCTGATTTACCAAGCAACATCAAGACATTGCTTACAGCACATGGAATTGACCCATCAAAACACACAGCACCCTTAAGCACTACCACAAGCATAAATGCTGAGGATAATTGGAGTGTTTCTGGCTTCAAGTCACCAAAGTCAAGGTCTTCAACTCTGAGGATGAAGTTAGCTGAGGATCATGATGATTTAGATGAAAATGGTTTAGCCAATGATGTGATTGGAAGAAATTCAAGATTTAGAGGAATCTGTGCTCTTCCTACACAACCCAAAAAAATGTTTAGCAAGTTGTGGTCTGCAAATAGAGCAGCAGCCACTGAAAAGAATTGA 1905 0.4121 MKFMKLGSRPDTFYTAEAIRSVSSEVCSDLIIQVRGTRYLLHKFPLLSKCLRLQKLCSESPDSSPHQIVQLPDFPGGIEAFELCAKFCYGITITLSPYNIVAARCSAEYLQMTEEVEKGNLIQKLDVFFNSCILRGWKDSIVSLQTTKALHLWSEDLEITSRCIEAIASKVLSHPTKVSLSHSHSRRVRDDVSSCNETESVRHKSNKGWWGEDLAELSIDLYWRTMIAIKSGGKVPSNLIGDALKIYASRWLPNITKNGHVNRKQVASDNSDLDSASEITSKHRLLLESIVSLLPAEKGAVSCSFLLKLLKASNILNASSSSKMELATRVGLQLEEATGNDLLIPSLSYTNDTLYDVELVMTILEQFMARGQSPPTSPPRSLMTFERRRSRSAENINFEFQESRRSSSASHSSKLKVAKLVDRYLQEIARDVTFSLSKFISLAEIIPDFARQDHDDLYRAIDIYLKAHPELNKSERKRLCRILDCKKLSMEACMHAAQNELLPLRVVVQVLFFEQARAAATNGDKVSDLPSNIKTLLTAHGIDPSKHTAPLSTTTSINAEDNWSVSGFKSPKSRSSTLRMKLAEDHDDLDENGLANDVIGRNSRFRGICALPTQPKKMFSKLWSANRAAATEKN* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0928 634 PANTHER OS12G0117600 PROTEIN 1 632 IPR043454 -
Lja2g0928 634 Pfam NPH3 family 209 493 IPR027356 -
Lja2g0928 634 ProSiteProfiles NPH3 domain profile. 208 517 IPR027356 -
Lja2g0928 634 PANTHER PHOTOTROPIC-RESPONSIVE NPH3 FAMILY PROTEIN 1 632 - -
Lja2g0928 634 Gene3D Potassium Channel Kv1.1; Chain A 15 119 IPR011333 -
Lja2g0928 634 SUPERFAMILY POZ domain 22 116 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0928 Lja-Chr2 8732617 8736104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0928 28 563 EF-hand Containing Proteins AT3G44820 34.759 5.80e-90 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0928 - - gmx:100797361 1036.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0928 2 8732617 8736104 Lja2g0928 2 8732617 8736104 ECH