Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0894 ATGGCTTCCTGTGGCGCCTTCCTTAAGCCAAACCACTCTCTGCTTCCATGCCATAAAACTTCAAGTCCAAAGCATGATAGCATAAAACAGTTCTGTGTGAGAGCTTCAGCTAGTAGCACCGATGATGGGGAAAGGACAATTATAAGGAAAGAGAAAGATGAGTGGAAGATCAAATACTCAAGCAAGAAACCAGTAACCCCTTTGCTGGACACAATCAACTACCCAGCTCATATGAAGAATCTTTCCACACAGGATCTTGAACAACTTGCTGCAGAGCTAAGGGCAGACATTGTACACACTGTTTCCAACTCTGGTGGGCATCTTAGCTCAAGCTTAGGAGTAGTGGAATTAACAGTGGCTCTGCATCATGTTTTCAACACCCCAGAAGACAAGATTATATGGGATGTGGGGCACCAGGCATATGCACACAAGATTCTCACAGGTAGAAGGTCTAGGATGCCCACTATTAGGAAAACCTTGGGACTAGCAGGCTTTCCTAAGAGAGACGAAAGCGTACATGATGCTTTTGGGACAGGGCATAGTTCTACAAGTATATCTGCTGGTCTTGGCATGGCAGTTGCAAGGGATATACTAGGAAAGAATAACAGTGTCATCTCAGTGATCGGAGATGGGGCAATGACCGCCGGCCAAGCTTATGAAGCCCTGAACAATGCAGGATTCCTTGACTGTAACATGATAGTTATACTTAACGACAACAAGCAAGTCTCTTTACCAACTGCTACAGTTGATGGCCCTGCAACTCCAGTTGGAGCCCTCAGTAGTACTTTAGCCAAAATTCAAGCAAGTACAGAATTTCGCAAACTCAGAGAAGCTGCAAAAACCATTACAAAGCAAATAGGAGGACAGACGCACCAGGTTGCGGCAAAGGTAGATGAGTATGCAAGAGGTATGATCAGTGCATCCGGCTCTACACTTTTTGAGGAGCTCGGCTTATACTACATCGGCCCTGTGGATGGTCACGACATTGAAGGTCTGGTCACCATTCTTGAAAAGGTGAAGGCAATGCCTGTCCCTGGTCCAATTTTGATTCATATTGTAACAGAGAAAGGGAAGGGATACCCACCAGCAGAAGCAGCTGCTGATAAAATGCACGGTGTTGTTAAGTTTGAACCAGCAACAGGCCGTCAGTTTAAGCCAAAATCCTCTACTTTGTCATATACCCAGTACTTTGCTGAGTCGTTGATAAAGGAAGCTGAAATAGACAACAAGATAGTAGGGATTCACGCCGCAATGGGTGGGGGAACAGGTCTAAATTATTTCCAGAAAAGGTTTCCAGACCGCTGTTTTGATGTGGGGATAGCTGAACAACACGCCATTACATTTGCAGCTGGATTAGCCGCAGAAGGTCTCAAGCCATTTTGTGCCATCTATTCATCATTCCTGCAACGTGGATATGATCAGGTGGTCCATGATGTAGATCTTCAGAAACTACCAGTTCGATTTGCTATTGATCGAGCTGGTTTGGTTGGAGCTGATGGGCCAACCCACTGTGGAGCATTTGATATCACATTCATGGCCAGCTTGCCCAACATGGTGGTCATGGCTCCATCTGATGAAGCTGAACTGATGCACATGGTTGCGACAACAGCAGCCATAGATGACAGACCAAGCTGCTTTAGATTTCCAAGGGGCAACGGGATTGGAGCCACCTTGCCGCTCAATAACAAAGGAACTCCACTTGAGATAGGAAAGGGCAAAATTCTGACAGAAGGCAGCAGAGTTGCCATTTTAGGATATGGTTCTGCAGTTCAACAATGCTTGCACGCAGCACAAATTCTTGAAGAACATGACATTTCTGTGACAGTCGCTGATGCAAGGTTTTGCAAACCCTTGGATATTGATCTCATTAAGCTATTGGCTAAGGAGCACGAGTTTGTCATCACAGTGGAAGAAGGTTCTATCGGAGGTTTTGGATCACATGTTTCACAGTTCCTAAGCATAGCTGGCCTCCTGGATGGACCGCTGAAGTGGAGAGCAATGACACTTCCTGACAGATACATAGAGCATGGATCACCACAAGATCAGATGGATGAAGCGGGACTTACATCAAAGCACATTGTAGCAACAGTCTTGTCTCTTCTGGAAAGGCCAAAAGAAGCTCTCTTATTCAAGTAA 2136 0.456 MASCGAFLKPNHSLLPCHKTSSPKHDSIKQFCVRASASSTDDGERTIIRKEKDEWKIKYSSKKPVTPLLDTINYPAHMKNLSTQDLEQLAAELRADIVHTVSNSGGHLSSSLGVVELTVALHHVFNTPEDKIIWDVGHQAYAHKILTGRRSRMPTIRKTLGLAGFPKRDESVHDAFGTGHSSTSISAGLGMAVARDILGKNNSVISVIGDGAMTAGQAYEALNNAGFLDCNMIVILNDNKQVSLPTATVDGPATPVGALSSTLAKIQASTEFRKLREAAKTITKQIGGQTHQVAAKVDEYARGMISASGSTLFEELGLYYIGPVDGHDIEGLVTILEKVKAMPVPGPILIHIVTEKGKGYPPAEAAADKMHGVVKFEPATGRQFKPKSSTLSYTQYFAESLIKEAEIDNKIVGIHAAMGGGTGLNYFQKRFPDRCFDVGIAEQHAITFAAGLAAEGLKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAIDRAGLVGADGPTHCGAFDITFMASLPNMVVMAPSDEAELMHMVATTAAIDDRPSCFRFPRGNGIGATLPLNNKGTPLEIGKGKILTEGSRVAILGYGSAVQQCLHAAQILEEHDISVTVADARFCKPLDIDLIKLLAKEHEFVITVEEGSIGGFGSHVSQFLSIAGLLDGPLKWRAMTLPDRYIEHGSPQDQMDEAGLTSKHIVATVLSLLERPKEALLFK* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0894 711 Pfam Transketolase, C-terminal domain 570 693 IPR033248 -
Lja2g0894 711 CDD TPP_PYR_DXS_TK_like 397 550 - -
Lja2g0894 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 65 453 IPR029061 -
Lja2g0894 711 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 69 354 IPR005477 GO:0008661|GO:0016114
Lja2g0894 711 SUPERFAMILY TK C-terminal domain-like 565 701 IPR009014 GO:0003824
Lja2g0894 711 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 71 701 IPR005477 GO:0008661|GO:0016114
Lja2g0894 711 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 711 IPR005477 GO:0008661|GO:0016114
Lja2g0894 711 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 1 711 - -
Lja2g0894 711 ProSitePatterns Transketolase signature 2. 497 513 IPR020826 -
Lja2g0894 711 CDD TPP_DXS 105 360 IPR005477 GO:0008661|GO:0016114
Lja2g0894 711 Pfam Transketolase, pyrimidine binding domain 391 552 IPR005475 -
Lja2g0894 711 SMART Transket_pyr_3 391 556 IPR005475 -
Lja2g0894 711 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 388 579 IPR029061 -
Lja2g0894 711 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 68 702 IPR005477 GO:0008661|GO:0016114
Lja2g0894 711 Gene3D - 61 363 - -
Lja2g0894 711 Gene3D - 391 558 - -
Lja2g0894 711 ProSitePatterns Transketolase signature 1. 94 113 IPR005474 -
Lja2g0894 711 Gene3D - 570 702 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0894 Lja-Chr2 8376659 8381035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0894 412 649 Acyl Lipid Metabolism Gene Families AT1G55510 23.320 1.60e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0894 K01662 - gmx:100799481 1236.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0894 2 8376659 8381035 Lja2g0894 2 8376659 8381035 ECH