Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0848 ATGAACTCTCATTCTTCTTCTTCTTCTGAGTTACCCCCTCTTCCCGAAACCCTAGATGGGTCTTCTTCAACCCATTTGGTCCCTGTTTTCTCCACTCTTGCCGGAGATTCATTTTATTCCCCTACCCGTGCTCTCTCTCCTCCTCCGCCACCGCCGCCGCCGTCGCTAACCATCGATGACAACGGTAATATTTATGCCGGCGTTGTCGATGAGGATGCTCTGAAAGTGGTTCCCGGCAGGGATCACTCCTTTCAGCTCCTCATCGACGACCCTTCCTCTGCCCCGCTGTATGTCCTTCCTCCCGCCGGTAATCAATTTGGGCCGGTGTTCTCGTCGCGGGTCACCGCGGTAGCACCACCTGATGTTCTGAACCCTGAACCTGTTTGCGACCTTTCCTGGTTGTTCACGAACAATTCATCTTCCAAGAATCGAATCTCCGCCACTCCCGCCACTTCCCCCCCTGAAGCTGCACCTTCTGGGATTGGTGCTGGGCTTGTAAATCTGGGCAATACATGCTTTCTCAACGCGATCCTGCAATGCTTTACGCACACAGTGCCCCTAGTCCAGGGTCTTCTCACATGCGGCCATTCCGCGCCTTGTGATAGACATGTTCGTGGGTTCTGCGTTCTTTGCGCTCTACGTGACCATGTTGACAGTTCCTTGGTGTTATCTGGACAATCTCTGTCTCCCTCGAAACTTGTGGATAATCTGAGTTATTTTTCTTCTCTATTTACAAAATACCAACAGGAGGATGCTCATGAATTTATGCAGCTTGCATTAGATAGACTGGAAGGATGTTTCCTAAATTTGAAGAAGAATGATATGAGTGTTGAAGATGATAATCTTGTAAAGAAAGTATTTGGAGGTCGTCTTATTAGCAAACTTCGATGTTGCAATTGTTGCCACTCTTCTGACACCTATGAGCCACTGATTGACATTAGTTTAGAAATAGGAAATGCAGATTCCCTTTCAAGTGCTCTGGAATCTTTCACTATGGTGGAAAATATTGATGCAAAGTTCAATTGTGATGGCTGTAAGGAAGAAGTGTCTAAGGAAAAACAGCTTATGCTGGATGAAACACCTGCAGTTGCAACATTTCATTTGAAGAGATTTAAGTCAGATGGGACCTCTGTTCAAAAGATTGATAAACATGTTGATTTCCCACTGGAGTTGGACTTGACCCCATACACCTTATCTGGTGAAAAAAATGATGCACCATTGAAGTACGATCTATATGCAATTGTTGTGCATAATGGAGTTTCCTATACCTCAGGACATTACTTTTGCTTTGTCCGCTCTGCTCCAGACACATGGCATAAGATGGATGATTCAAAGGTTACCAAGGTGTCAGAAAACTCTGTGCTGTCTGAGGAAGCATACATACTGTTTTATGCACGACAGGGAACCCCATGGTTTTCAAGTGTTTTTGAATCTCTAAGACTATACTTAAAGCCAAGTATAATGAATACTTCTCCTAAGTCTGTTTTGGACAGTGTTGCCAACTCAGATAAATCAAATGCAATTGTTGAGGGTGGAGCGACTAATGAGTCTGATCCATTTTCTAAGAATCTGCTTGACATGTCCTGTCATGAAGTTCTTGAAATCAATGACACTAGTGATGATGCTCCTCATGACTGTGGATATTCTGTTGGGCCAAATAGTGCTACTTTGGATAGCATTGTTATGCCTAATAGAAACTCAAGCATAGAGATTGATGCTTTGGTTCAAAACAATGTCTGTGCAGAAGTATCTGAAGAAAATGCTGCTTTTCACCCTTTAACTCCTCCCTGCTCCCCTTCTAATGCTGCAGACAATATTTTCCCCATCTCACATGATCACTTGAAGAAGGAGAATCATGGGAGCTGTAAAAGACCATCCAATAACCTCTCGGGTGGTTCTGAAAGACAAGTTGCCGAGAGATACATTAGCAAGATGTCTGGTGCGAGGAAAGCTGCATTCATGAAATTCTTTCCTCAGAGCGAATCTCCTTCGGACAAGAAGAGAAAGAAGGTGGATTCATTGCAGTGTAAGAAAGACGAGTCAAGTGTTTCAAAGAAATCAAACCGTGTTTCTGTTTCCCACCCTGTGACAGCTGGAACATCTAAGTGA 2109 0.4424 MNSHSSSSSELPPLPETLDGSSSTHLVPVFSTLAGDSFYSPTRALSPPPPPPPPSLTIDDNGNIYAGVVDEDALKVVPGRDHSFQLLIDDPSSAPLYVLPPAGNQFGPVFSSRVTAVAPPDVLNPEPVCDLSWLFTNNSSSKNRISATPATSPPEAAPSGIGAGLVNLGNTCFLNAILQCFTHTVPLVQGLLTCGHSAPCDRHVRGFCVLCALRDHVDSSLVLSGQSLSPSKLVDNLSYFSSLFTKYQQEDAHEFMQLALDRLEGCFLNLKKNDMSVEDDNLVKKVFGGRLISKLRCCNCCHSSDTYEPLIDISLEIGNADSLSSALESFTMVENIDAKFNCDGCKEEVSKEKQLMLDETPAVATFHLKRFKSDGTSVQKIDKHVDFPLELDLTPYTLSGEKNDAPLKYDLYAIVVHNGVSYTSGHYFCFVRSAPDTWHKMDDSKVTKVSENSVLSEEAYILFYARQGTPWFSSVFESLRLYLKPSIMNTSPKSVLDSVANSDKSNAIVEGGATNESDPFSKNLLDMSCHEVLEINDTSDDAPHDCGYSVGPNSATLDSIVMPNRNSSIEIDALVQNNVCAEVSEENAAFHPLTPPCSPSNAADNIFPISHDHLKKENHGSCKRPSNNLSGGSERQVAERYISKMSGARKAAFMKFFPQSESPSDKKRKKVDSLQCKKDESSVSKKSNRVSVSHPVTAGTSK* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0848 702 MobiDBLite consensus disorder prediction 615 636 - -
Lja2g0848 702 Pfam Ubiquitin carboxyl-terminal hydrolase 164 464 IPR001394 GO:0004843|GO:0016579
Lja2g0848 702 MobiDBLite consensus disorder prediction 40 61 - -
Lja2g0848 702 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 145 516 - -
Lja2g0848 702 Gene3D Cysteine proteinases 162 469 - -
Lja2g0848 702 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g0848 702 MobiDBLite consensus disorder prediction 661 685 - -
Lja2g0848 702 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 409 427 IPR018200 GO:0004843|GO:0006511
Lja2g0848 702 SUPERFAMILY Cysteine proteinases 162 466 IPR038765 -
Lja2g0848 702 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 145 516 - -
Lja2g0848 702 MobiDBLite consensus disorder prediction 43 57 - -
Lja2g0848 702 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 164 179 IPR018200 GO:0004843|GO:0006511
Lja2g0848 702 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 163 467 IPR028889 -
Lja2g0848 702 MobiDBLite consensus disorder prediction 686 702 - -
Lja2g0848 702 MobiDBLite consensus disorder prediction 657 702 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0848 Lja-Chr2 7905115 7908902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0848 154 466 Miscellaneous Gene Families AT4G31670 36.646 6.24e-57 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0848 K11855 - gmx:100806936 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0848 2 7905115 7908902 Lja2g0848 2 7905115 7908902 ECH