Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0840 ATGGCAATGAGCAACAATGTCATCGGAGCAGTCAACTTCGTCGCCGTGCTCCTCTCAATCCCCATCATCGGCGCCGGAATCTGGCTAATGAATGGCGCAGCTGATTCCTGTGTATCCTTCCTACAATGGCCCGTCATCATTCTTGGTGTTCTTATCCTCGTCGTGGCTCTCGCAGGTTGCATTGGAGCCTTCTTCAGAATCTCATGGCTTCTCATAATCTACCTCATTGCCATGCTCATCCTCGTTATACTTGTCATTTGCTTGGCTGTTTTCGTTTACATGGTCACCATTCGTGGTCATGGCCTCATGGAACCCAACCGCGCTTACTTGGAGTACCGTTTGGATGACTTCTCAGGGTTTCTTCGTCGCAGGGTGAGAAGCTCGTTCAAGTGGGATCACATCAGAAGCTGTCTTAGTCAAACGAACATGTGCGCTGAGCTTAACCAGAGTTTCCGAATGGCTCAGGATTTCTTTAACGCGCGTCTAACGCCTATGCAGTCAGGGTGCTGCAAGCCACCGACGCAATGTGCGTACACATTTGTGAACCCAACTTATTGGATAAGCCCGATTAACACAGCAGCAGATATGGATTGCCTGCAGTGGAGCAACGACCAAACACAACTTTGCTACGGCTGTGACTCCTGCAAGGCTGGTTTGTTGGCAAATCTCAGGAAGGAGTGGAAAAGAGCCAATGTCGTATTGATCATCACCCTTGTCGTTTTGATAGTGGTTTATATGGTAGGATGCTGTGCCTTTAGAAATGCCAAAACTGAGGATCTCTTTCGCAAATACAAGCAGGGCTATACTTGA 810 0.4852 MAMSNNVIGAVNFVAVLLSIPIIGAGIWLMNGAADSCVSFLQWPVIILGVLILVVALAGCIGAFFRISWLLIIYLIAMLILVILVICLAVFVYMVTIRGHGLMEPNRAYLEYRLDDFSGFLRRRVRSSFKWDHIRSCLSQTNMCAELNQSFRMAQDFFNARLTPMQSGCCKPPTQCAYTFVNPTYWISPINTAADMDCLQWSNDQTQLCYGCDSCKAGLLANLRKEWKRANVVLIITLVVLIVVYMVGCCAFRNAKTEDLFRKYKQGYT* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0840 269 Pfam Tetraspanin family 7 251 IPR018499 GO:0016021
Lja2g0840 269 ProSitePatterns Transmembrane 4 family signature. 49 71 IPR018503 GO:0016021
Lja2g0840 269 PRINTS Transmembrane four family signature 65 93 - -
Lja2g0840 269 PRINTS Transmembrane four family signature 38 64 - -
Lja2g0840 269 PRINTS Transmembrane four family signature 6 29 - -
Lja2g0840 269 PANTHER TETRASPANIN-8-RELATED 1 268 IPR044991 GO:0009734|GO:0016021
Lja2g0840 269 PANTHER TETRASPANIN/PERIPHERIN-RELATED 1 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0840 Lja-Chr2 7828580 7830322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0840 1 269 Miscellaneous Gene Families AT5G46700 69.517 3.61e-134 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0840 - - gmx:100791755 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0840 2 7828580 7830322 Lja2g0840 2 7828580 7830322 ECH