Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0832 ATGGCTAAAGGGAAACCCAAGAAATCTTCCAAGACCCCTCAAAACGACGCCGTATCACCCCCTGCCGGTATTTTCAGCACGCTATTTGGCAACGCGGCGGAAGAGAGCGCCGGCACCGCCGCTTCTCTGTTTTCCGATAACAACCCCTTTCGGAGAAAGCCTCAGCAACCTGCTCCTGTTTCTGATGAAATCAATCACACTCAGAGCCCCATCAACGACGGCGAAGAGAAGAAGAGGAAGAGGAAAAAGGAGAAAACCCCCGCCGTTGATTCCGATATTGTGATGGAAGCTTCGGAGAAGTCGGAGAAGAAGAGGAAACATGGCTCTGATGAAAGGGTAAGGGTAAGGGAAAGGGAAGATCTTGATTTGGAGGTGAAAGCCATTGGGGAGGGAGAAGAGGGGGAGAGGAAGAACAAGAGGAAGAGAGAGGAGCTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATAGTGGAGGGTGGAGAGGGAGGTGAAGGGGAAGGGCATGGGAAGAAAACTGTTGGAAGCAAGAGGAAGGTGTTGGATAATCCAGCTGATATGTTGGTTTCAAAGGAAGGTTTTGATGATGAGGATAAGCTTTTGAGGACCATTTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGACTTTGATGACTGAGTTTAAGAAATTTGGTGAGGTGGAATCTGTCAGGATTCGCTCTGTTCCATTACAAGATACCAAAAAACCTAGAAAGGGAGCTATACTCGCGAAGAAAATTGATGAATCCGCTGATAGCGTTAATGCATATATTGTTTTCAAAGATGAACAAGCTGCTCAGGCTTCTTTGTCCCACAACATGACTGTGGTTGAAGGAAACCACATTCGTGTTGATAGGGCATGCCCACCTCGCAAGAAACTTAAAAGTGAGAGTGCTACACTTTATGATAATAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAACTTTATCAGTTATTTTGTGGTATACACAACCTATCTTCAAGTATAGAAGCTGTTAGAGTGGTTCGTGATCCTCATCTTAATGTTGGAAAGGGTATTGCCTATGTCCTCTTTAAAACAAGGGAAGCTGCTAATTTTGCTGTTAAAAGACGGTACTTGAAGCTTCGAGACCGGGAGTTGAGACTTAGTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGCTGAATACCCCATCTAAAAGGCTGGAGACCCCATCTAAAAGGCCGAACTCATCACCAGCACAAGCTCCTAGTACGCCTGCGAAGAAGCCTGTGGCTTCAAGGTCTCCTTCAATCAGTATTACCAAGCCAGACAAGAAACCATCTTATCAGGGTCTGCGTGCAACCAAGCCAACAGCCCACAAGAAAACTCCTGGAGGAGAGAAACCAAAAGTGCGCAAGACGAAAAGACCATCAGTAGCTGCCAGAAGGGCTAAACCAAATTTTGCGAAGGAGGATGGTCCACCTAAACAAGCAGGGACGAAACGCAAGCTTGATAGTCGTACTCCAGACAGCTCCCTACGAGCTAAGAAAAAGAACAAGTAG 1563 0.4619 MAKGKPKKSSKTPQNDAVSPPAGIFSTLFGNAAEESAGTAASLFSDNNPFRRKPQQPAPVSDEINHTQSPINDGEEKKRKRKKEKTPAVDSDIVMEASEKSEKKRKHGSDERVRVREREDLDLEVKAIGEGEEGERKNKRKREELEKEWEEKKYGIVEGGEGGEGEGHGKKTVGSKRKVLDNPADMLVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLMTEFKKFGEVESVRIRSVPLQDTKKPRKGAILAKKIDESADSVNAYIVFKDEQAAQASLSHNMTVVEGNHIRVDRACPPRKKLKSESATLYDNKRTVFVGNLPFDVKDEELYQLFCGIHNLSSSIEAVRVVRDPHLNVGKGIAYVLFKTREAANFAVKRRYLKLRDRELRLSHAKADATPSKRLNTPSKRLETPSKRPNSSPAQAPSTPAKKPVASRSPSISITKPDKKPSYQGLRATKPTAHKKTPGGEKPKVRKTKRPSVAARRAKPNFAKEDGPPKQAGTKRKLDSRTPDSSLRAKKKNK* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0832 520 MobiDBLite consensus disorder prediction 485 520 - -
Lja2g0832 520 CDD RRM2_RBM34 313 389 IPR034221 -
Lja2g0832 520 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 295 IPR000504 GO:0003723
Lja2g0832 520 MobiDBLite consensus disorder prediction 69 115 - -
Lja2g0832 520 MobiDBLite consensus disorder prediction 390 520 - -
Lja2g0832 520 Gene3D - 197 300 IPR012677 -
Lja2g0832 520 MobiDBLite consensus disorder prediction 38 68 - -
Lja2g0832 520 SMART rrm1_1 313 389 IPR000504 GO:0003723
Lja2g0832 520 SMART rrm1_1 202 291 IPR000504 GO:0003723
Lja2g0832 520 MobiDBLite consensus disorder prediction 1 115 - -
Lja2g0832 520 MobiDBLite consensus disorder prediction 396 444 - -
Lja2g0832 520 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 393 IPR000504 GO:0003723
Lja2g0832 520 PANTHER RNA-BINDING PROTEIN 34 45 519 - -
Lja2g0832 520 SUPERFAMILY RNA-binding domain, RBD 194 301 IPR035979 GO:0003676
Lja2g0832 520 MobiDBLite consensus disorder prediction 460 474 - -
Lja2g0832 520 MobiDBLite consensus disorder prediction 126 145 - -
Lja2g0832 520 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 45 519 - -
Lja2g0832 520 CDD RRM1_RBM34 201 291 IPR034220 -
Lja2g0832 520 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 386 IPR000504 GO:0003723
Lja2g0832 520 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 203 245 IPR000504 GO:0003723
Lja2g0832 520 Gene3D - 301 399 IPR012677 -
Lja2g0832 520 SUPERFAMILY RNA-binding domain, RBD 308 403 IPR035979 GO:0003676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0832 K14837 - gmx:100809622 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0832 2 7752654 7757487 Lja2g0832 2 7752654 7757487 ECH