Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0820 ATGTCGATAAAAACTGTTAAAGTCTGTAATGTTTCCTTGGGAGCAACTGAGCGAGACATAAAGGAGTTCTTTTCTTTTTCTGGTGATATTGAATATGTCGAACTGCACAGTCATGATGAGCGATCACAAATTGCTTATGTTACCTTCAAGGATTCGCAGGGAGCTGAGACTGCAGTACTGCTATCGGGAGCAACAATAGTTGATATGTCAGTTACAATAACTTTGGATCCAACTTACCAGCTTCCACCTGCTGCTTTGACATCATCTGTAAAAGAAAGTGAAGCTCCTGCTGGTGCTGAATCTGCTTTGCAGAAGGCAGAGGATGTGGTTTCCAGTATGCTAGCCAAGGGTTTCATCTTAGGGAAAGATGCTGTTCACAAAGCTAAGACTTTCGATGAGAAGCTTCAGTTATCTTCAACAGCATCGGCAAAAGTTGCATCTTTTGACCAGAAAGTTGGGCTTAGTGAGAAAATTAGTGCTGGTGCTTCAGTTGTGAGTGATAAGGTTCGAGAAGTGGATCAAAAGTTTCAGGTTTCAGAGAAGACGAAATCAGCACTTTCTGCTGCTGAACAGACAGTCAGTACTGCTGGTTCTGCCATAATGAAGAATCGATACATTCTTACTGGGGCCTCCTGGGTAACAGGTGCTTTTAGTAGGGTTACTAAGGCAGCTGGGGAAGTAGGTGAAAAGACCAAAGAGAAAGTAGAGAATGCAGAACAGCAGCACAAGCAAAACACTGGAGATTCTGGGCCACCAAAAGCAGCAGCAGCAAGTGAGCACTAG 783 0.4368 MSIKTVKVCNVSLGATERDIKEFFSFSGDIEYVELHSHDERSQIAYVTFKDSQGAETAVLLSGATIVDMSVTITLDPTYQLPPAALTSSVKESEAPAGAESALQKAEDVVSSMLAKGFILGKDAVHKAKTFDEKLQLSSTASAKVASFDQKVGLSEKISAGASVVSDKVREVDQKFQVSEKTKSALSAAEQTVSTAGSAIMKNRYILTGASWVTGAFSRVTKAAGEVGEKTKEKVENAEQQHKQNTGDSGPPKAAAASEH* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0820 260 MobiDBLite consensus disorder prediction 226 260 - -
Lja2g0820 260 Gene3D - 2 74 IPR012677 -
Lja2g0820 260 SMART rrm1_1 5 74 IPR000504 GO:0003723
Lja2g0820 260 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
Lja2g0820 260 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Lja2g0820 260 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 246 - -
Lja2g0820 260 MobiDBLite consensus disorder prediction 226 241 - -
Lja2g0820 260 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Lja2g0820 260 PANTHER BINDING PARTNER OF ACD11 1 1 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0820 Lja-Chr2 7652778 7656659 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0820 - - gmx:100809613 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0820 2 7652778 7656659 Lja2g0820 2 7652778 7656659 ECH