Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0790 ATGGATCCAAATAGGGGAGATAGCTGGAGGGAATTGGTCAAGAAGATGCTTCCTCCTGGTGCTTCTGTTCCTGATGATGCTTCTGATCTTGATTACTCTATAGCTCTTGAATATGAAGGTCCACCGGTTTCGTATGAAGTGCCAAGAGTTGAGCCCTTCGATGTGAACTCAAGAGAAATTCCCACTGCTGAACCACTGTCTGGATCACAAAGATCAAGTACTCATGTGATTGAACCTATCCCTCTGCCGGTGTCTCGTATTGCAGGTGTGACGGGGTCTCCTAATCATAGCCCGAGGGTGTCGGGAAGTTCAGAATCTGTGGTTTCGGTGTTGCAGAACCCGGATCTTTCTTCTGCGTCGCCTTCTGCTTCGCCTGCTTCAGTTCATAATCCTGCTAACAATCCTCCTATGCCGGCGGCTAATGAAGCAAAGAGGGCGCCTGTTGTCACTTTTAATACTGTTGATAGATCTCAGACGAAAGAGGTGGAGGTTGTGAAGCCGGTTTATCCGGAATACGTCGGGGTTTTGAAAGAAAGGAAGAAGAAGAAAATAAGAGTTTGCTATAGGTGTGGGAAAGGGAAGTGGGAAACTAAGGAGTCTTGCATAGTTTGTGATGCCAAGTATTGCAGTAACTGTGTGCTAAGGGCGATGGGATCGATGCCAGAAGGGCGCAAGTGCGTAACTTGTATTGGTCAGCCAATTGATGAATCCAAGCGTCTGAAATTGGGTAAATATTCGAGGGTGTTGTCCCGGCTGTTAAGTCCTCTAGAAGTCAAGCAAATTATGAAGGCAGAGAAAGAGTGTTCTGCTAATCAGCTTAGGCCGGAGCAGTTGATTGTGAATGGATTGCCCCTGAAGCCAGATGAGATGGCAGACCTACTTGGGTGCCCCTTACCTCCACGTAAGCTGAAGCCCGGTAGATATTGGTATGACAAAGAATCTGGTCTTTGGGGAAAGGAAGGGGAAAAACCTGACAGACTCATAAGCTCGAACTTGAATTTCACGGGGAAACTCTGCTTCGACGCTAGTAATGGAAACACTGAGGTTTACATCAATGGTCGAGAGATTACTAAACTTGAATTGAGGGTACTCAAGCTGGCAAACGTGCAGTGTCCGCGTGATACACACTTTTGGGTTTATGATGATGGTCGTTATGAGGAGGAAGGTCAAAATAATATCAGAGGAAACATTTGGGGGAAGGCATCAACAAGATTTGTTTGTGCCCTGTTCTCTCTGCCCTTTCCCCACGGACAGCCTCATGGGACAAGAGATGAGATTAGTAATTATACCACAGTTCCTAATTATCTAGAAAAGAAAAAGATTCAGAAGCTTCTTCTTCTTGGAATTCAAGGGTCTGGAACTAGCACAATATTTAAGCAGGCCAAGTTTTTGTATGGGGACAAGTTCACTACTGAAGAGCTGCAGGATGTCAAACTGATGATCCAGAGTAACATGTACAAGTATCTTAGCATTTTGCTCGATGGAAGAGAGCGCTTTGAAGAGGAGGCTGTTTCTAGAATGAATGAACAAGGTTCCCCTGGCCAAACTACAGAACCAGGTAGCAATGGTGAAGCAAGTAATACTAGTGAATGCATCTATTCCCTCAACCCAAGGCTAAAGCATTTCTCTGACTGGTTGTTGGACATTATAGCTACTGGGGATTTAGATGCATTCTTCCCTGCAGCCACACGTGAATATGCACCGTTAGTTGAAGAAGTGTGGAAGGATCCAGCAATACAAGAAACCTTCAAAAGAAAAGATGAGCTTCACTTTCTTCCAGATGTTGCAGAGTACTTCTTAAGCCGGGCTGTTGAGATATCTAGCAATGAATACGAACCTTCTGAAAGGGACATACTTTATGCAGAAGGGGTTACACAGGGAAATGGCTTGGCTTTCATGGAATACTCCCTAGATGACCGTTTGCCAAGGTCGGAGACTTACACAGATAACCTGGATGGTCAGCTTCCACCTCTGACCAAGTACCAGCTCATAAGGGTGAACGCCAAGGGCATGAGTGAGGGTTGCAAGTGGGTTGAAATGTTTGAAGATGTCCGAGCAGTGGTCTTTTGCGTTTCCCTCAGCGACTTCGACCAGTTGTGGCTTGCCCCAGACAGCAGCGGCAGCGGCACACTTCTTCAAAACAAGATGATACAAAGCAAGGAGCTTTTCGAGACCATGGTGAGGCACCCTTGCTTCAAAGACACCCCATTTGTCCTGGTCCTGAACAAATACGACATGTTTGAGGAAAAAATGAGTAGGGTGTCCTTAAATGCTTGTGAATGGTTCAGCGATTTTTGTCCCGTGCTCGCACACCAAAACAACCAGTCACTGGCACATCAGGCTTACTTCTACGTCGCAATGAAATTCAAGGACCTCTATGCATCCCTCACGGGAAGGAAACTTTTTGTGGCACAAGCAAGAGCGAGGGACCGAGTAACTGTTGATGAGGCATTTAAGTACATAAAAGAGGTTCTCAAGTGGGATGAGGAAAAGGACGAGAATTACTATGGTCCACCTGAGGATTCATTTTACAGCACAGACATAAGCTCCTCTCCCTATATCAGACAAGAGTAA 2574 0.4584 MDPNRGDSWRELVKKMLPPGASVPDDASDLDYSIALEYEGPPVSYEVPRVEPFDVNSREIPTAEPLSGSQRSSTHVIEPIPLPVSRIAGVTGSPNHSPRVSGSSESVVSVLQNPDLSSASPSASPASVHNPANNPPMPAANEAKRAPVVTFNTVDRSQTKEVEVVKPVYPEYVGVLKERKKKKIRVCYRCGKGKWETKESCIVCDAKYCSNCVLRAMGSMPEGRKCVTCIGQPIDESKRLKLGKYSRVLSRLLSPLEVKQIMKAEKECSANQLRPEQLIVNGLPLKPDEMADLLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRLISSNLNFTGKLCFDASNGNTEVYINGREITKLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWGKASTRFVCALFSLPFPHGQPHGTRDEISNYTTVPNYLEKKKIQKLLLLGIQGSGTSTIFKQAKFLYGDKFTTEELQDVKLMIQSNMYKYLSILLDGRERFEEEAVSRMNEQGSPGQTTEPGSNGEASNTSECIYSLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAIQETFKRKDELHFLPDVAEYFLSRAVEISSNEYEPSERDILYAEGVTQGNGLAFMEYSLDDRLPRSETYTDNLDGQLPPLTKYQLIRVNAKGMSEGCKWVEMFEDVRAVVFCVSLSDFDQLWLAPDSSGSGTLLQNKMIQSKELFETMVRHPCFKDTPFVLVLNKYDMFEEKMSRVSLNACEWFSDFCPVLAHQNNQSLAHQAYFYVAMKFKDLYASLTGRKLFVAQARARDRVTVDEAFKYIKEVLKWDEEKDENYYGPPEDSFYSTDISSSPYIRQE* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0790 857 Gene3D - 471 622 IPR011025 GO:0007165
Lja2g0790 857 PRINTS Alpha G protein (transducin) signature 443 458 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lja2g0790 857 PRINTS Alpha G protein (transducin) signature 684 712 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lja2g0790 857 PRINTS Alpha G protein (transducin) signature 737 746 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lja2g0790 857 PRINTS Alpha G protein (transducin) signature 611 633 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lja2g0790 857 Gene3D - 643 834 IPR027417 -
Lja2g0790 857 MobiDBLite consensus disorder prediction 502 528 - -
Lja2g0790 857 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 19 853 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lja2g0790 857 MobiDBLite consensus disorder prediction 508 528 - -
Lja2g0790 857 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 19 853 - -
Lja2g0790 857 Coils Coil 853 857 - -
Lja2g0790 857 MobiDBLite consensus disorder prediction 90 130 - -
Lja2g0790 857 MobiDBLite consensus disorder prediction 87 143 - -
Lja2g0790 857 MobiDBLite consensus disorder prediction 843 857 - -
Lja2g0790 857 CDD G-alpha 448 828 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lja2g0790 857 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 832 IPR027417 -
Lja2g0790 857 Pfam G-protein alpha subunit 437 824 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lja2g0790 857 SUPERFAMILY Transducin (alpha subunit), insertion domain 469 621 IPR011025 GO:0007165
Lja2g0790 857 SMART galpha_1 430 814 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lja2g0790 857 MobiDBLite consensus disorder prediction 832 857 - -
Lja2g0790 857 SUPERFAMILY FYVE/PHD zinc finger 163 230 IPR011011 -
Lja2g0790 857 ProSiteProfiles G-alpha domain profile. 440 836 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0790 Lja-Chr2 7239269 7245717 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0790 - - gmx:100794534 1562.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0790 2 7239269 7245717 Lja2g0790 2 7239269 7245717 ECH