Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0689 ATGGCGTGTGAGGAAGTGGCTAATTCGAGGCCTCTGTTCCTCACGATCTACACTGTTGTCATCGTTGGCATCGTTTTCTCCTCATTCTACATCTTCTCCGCCTTATACTCCTCATCCACCAACCCTGCTGCTTGGTCATCTTTCAGTCCTCATACGAATGATGATCCTCATCTTACAGATAAAATACTCAACAGTTCTCACTCAGCAACTGTGCATGTTGCGCCCTCTCCTTCCCAGGAGACACAGCATGTGTCCACAAGACCTATTTTGAATGTTCCTCCAGTCAGTAAAAAGATGCCACCTTTGAAGTCTTTCCGACTGACAAAAAAACTAGTTCAACAAAGGGTGAAAGATAACATTATAATAGTGACATTTGGCAACTATGCATTTATGGACTTTATTCTGACTTGGGTTAAACAGTTGAATGATCTGGGAGTTTCTAATTATCTTGTTGGTGCAATGGATACCGAATTATTGGAGGCGCTTTATTGGAAAGGCGTACCAGTTTTTGACATGGGCAGCCACATGAGCACAGTAGATGTTGGCTGGGGGTCTCCAACATTTCATAAAATGGGGAGAGAAAAAGTTATTTTGATAAACTCAATACTGCCTTTTGGTTACGAGCTGTTGATGTGTGACACTGACATGGTTTGGTTGAAGAATCCACTTCCATATCTTGCTCGTTATCCTGAAGCAGATGTTTTAACATCCAGTGATCAAGTTATACCGACAGTTGTTGATGATAGACTGGAAGTTTGGCAAGAAGTTGGTGCTGCCTACAACATAGGAATTTTCCATTGGAGACCAACGGAGTCTGCAAAAAAGTTGGCAAAGGAATGGATAGAACTGCTTCTAGCTGATGATAAGATATGGGATCAGAATGGGTTTAATGATATTGTACACAGACAGTTAGGACCATCTGTTGATGAGGACAGTGGACTTGTTTATGCTTATGATGGAAATCTAAAGCTGGGAATTTTGCCTTCAAGTATCTTCTGTAGTGGACATACATATTTTGTCCAGGCTATGTATCAGCAACTCAGGTTGGAGCCATATGCAGTGCACACAACATTTCAATATGCAGGCACTGAAGGAAAGCGTCACAGACTGCGAGAAGCCATGCTTTTCCGTGATCCACCAGAATACTATAATCCTCCTGGGGGTTTCTTGTCATTTAAGCCGTCTATTCCGAAAAGTTTGTTGCTAAATGGGAATCATACCATTGAATCACATTTCACCCTTATTAATTACCAAATAAAACAGATTAGGGCAGCACTTGCAATTGCTTCCCTTCTCAAAAGAACGCTGGTCATGCCTCCACTATGGTGCAGGATTGATAGGCTATGGTTTCCCCATCCTGGTGTTTTGGAAGGGTCTATGACCAGACAACCTTTTCTGTGTCCTTTGGACCATGTATTCGAGGTGAATGTCATGTTGAAAGAACTCCCAGAGGAAGAGTTTGGCCCTGGAATAGATATCAGAGAGTATTCAATTCTTGATAACCCCTCTCTGCCCTCAGAGGTGAAAAATTCATGGCTTGATGTTCAGCTCTGTAAAGAAGGAACCCAAGACTGTAATGCATCAAATAATAGCACAGTTGGGAAAGTGCTTAAATTTCCAAAGCATAGCAATGAAGAAACGTTCATTAAAGTATTTTCATCATTCAAGGATGTAAAAGTCATCCAATTCTCTTCAATGCAAGATGCTTTCACGGGTTTCATGGACAAGGAAAGCGAAGATAGATTCAGAAAACGTGTTAAGCATTACACGGGTATATGGTGCTGTGTGCTGGATCACAATCCTGGCCACATATATTATGATATGTACTGGGATGAGAAACCTGAATGGAAGCCAATCCCTCCTCAAACTTCTGCAGATGATCATCCACCTTGTTGTCAGATTCATGTCCCTCAATGCAAGACAGGATTTTTCATAGCTACAATCAAGAAACAAGTGAAAATGAGAACATGGGTAAAGCACATAACAACATGGGATGTTCAAAATTTAGTCCTTCTTCGAAAAAGAAGATCACCTTCATTCCGTTCATTTTCTTCACAGAACTACTTAAATGGAAGTTTCAGCAATGTTCAGAGACACATGGTTCATATTCTTCGATATGCTCCTGCCCTTTTGTCATGTTGTTGTCATCGTTTTTGCACTGGCATTCAGCTGTTTGATGAAATGCCGCAAAGGGCTCTGCATGTAAGAGAAAACCATTTTGAGCTTGTTGTGGATTGCATTAAATTGTGCCTGAAAAAACCCAACATTTTGACTGTCACTGTTGCTCATTGTGCAGCTGTAAAGATAGGAGTTCTAACTCATCTCCCCACTTCAACATCTCTACTCACTGCTTATTCTAAGGCTGGAGACTTCACCTCTTCCAGGGATTTGTTTGATGAGATTACGAACAGGGATGTGGTTGCTTGGAATGCTATTATTGCAGCATCTCTTGTAAATAACTGCTATATGACTGCAATGGAATTTTTTGAAAAAATGATCAAGGCCCAAACTGGGTTTGATTCCACCACTCTATTGCTTATGGTATCAGCATCGTTACATGTGAAAAACTTCGATCAAGGACGGGCAATTCATTGTGTGAGTATAAAACATGGGATGCTTGTGGATGTAAGTTTAGGTAATGCTCTTATTGACATGTATGCTAAGTGTAGTGACCTAAGCTCTTCTGAGCATCTGTTTGAAGAGATGGAGTATACAGATGTTGTTTCGTGGAATTCAATAATGAGAGGAAGTCTTTACAATGGTGATCCTGAGAAATTATTGTACTACTTCAAAAGGATGACTTTATCTGAAGAAATCGCTGACCATATCAGTCTATCTTGTGCTATTTCAGCTTGTTCAAGTTTGAGAGAGCTGGCTTTTGGCCAGACCATTCACGGGCACGGAATCAAGCTAGGTTACAATGACAGCTCGCGTGTTTCAGTAGCGAACTCGCTCATTTCCTTGTATTCACAATGTAAAGACATTGAGTCTGCTGAGACTGTATTCAGAGAAATAGCATACAAAGATATTGTTTCCTGGAATGCAATGCTAGAAGGATTTGCTTCAAATGAAAAGATTAATGAAGTATTTGATATTCTGGTTGAAATGCAAACAACAGGATCTTTCCGACCTGATATAGTAACATTGACTACCATACTTCCAATTTGTGCACAACTCATGCTCTCCAGAGAAGGAAAAACTATCCATGGATTTGCAATTCGAAGACAGATGGTATATGATCATCTTCCTTTGCTGAACTGCCTCATAGACATGTATTCAAAGTGCAACCTTGTGGAGAAAGCAGAGCTCTTGTTCCATTCTACTGCTAAGAGAGACTTGGTCTCATGGAACACAATGATATCTGGCTATTCCCAGAACAAGTATTCTGAAGAAGCTCAATTTTTTTTCAGAGAGCTGCTACGGCGAGGTCCAAATTGCAGTTCATCAACTGTTTTTTCCATTCTTTCTTCCTGCAACTCCCTTAACGGTCTCAACTTCGGAAAATCAGTTCACTGCTGGCAGTTAAAATCTGGTTTTCTGAACCACATTCTTTTAATAAATTCTCTCATGCACATGTATATCAATTGTGGAGACCTCACAGCCAGTTTCTCCATTTTGCATGAGAATTCAGCTTTAGCAGATATTGCTTCTTGGAACACTGTAATTGTGGGCTGTGGGCAAGGTAACCATTATCAAGAATCTCTAGAGACTTTCAGGTTATTTAGACAGGAACCTCCTTTCGCCTATGACTCCATAACCCTTGTAAGTGTCTTGTCAGCTTGTGCCAACCTGGAACTACTCATCCAAGGAAAATCTCTCCATGGCCTTGCCCTTAAATCTCCTTTGGGATCAGATACTCGAGTTCAGAACTCATTAATTACCATGTATGACAGATGCAGGGACATTAACAGTGCCAGAGCAGTGTTTAAATTCTGCTCTACTTCCAACCTATGCTCATGGAATTGCATGATCTCTGCTTTATCTCATAATAGAGAATGTAGAGAAGCATTGGAACTATTTCGTCATCTTCAGTTTAAACCAAACGAGTTCACCATGGTTAGTGTTCTTTCTGCTTGCACTCAGATTGGTGTCCTAAGACATGGAAAACAAGTTCATGCCCGCGTGTTCCGGTCCGGGTTTCAAGACAATTCTTTCATATCATCAGCTCTTGTAGATTTGTATAGCAACTGTGGAAGATTGGACACTGCTCTCCAGGTGTTCAGACATTCAGTGGAGAAGTCCGAATCGGCTTGGAATTCAATGATTTCTGCATATGGCTATCATGGAAATAGTGAGAAAGCTATCAAACTCTTCCATGAGATGTGTGATTCAGGAACAAGGGTGACCAAAAGCACTTTTGTTAGCCTTTTATCTGCATGCAGCCATTCAGGACTTGTGAACCAAGGTCTTTTGTACTATGACTCTATGTTGGAGAAATATGGAGTTCAACCTGACACTGAGCATCATGTTTTCGTGGTTGACATGCTAGGGAGATCAGGTAGACTGGATGATGCTTACGAATTCGCTAAGGGGTTACCATCCCATGCGAGCTCAGGTGTATGGGGAACGCTTCTAAGTGCATGCAACTATCATGGAGAACTCAAGTTAGGGAAACAAATTGCTGAACTTCTCTTTGAAATGGAACCTCAAAATGTTGGATATTACATATCATTGTCAAATATGTATGTTGCTGCAGGAAGCTGGAAAGATGCTACTGACTTGAGACAATCTATCCAGGACCAAGGATTAAGGAAAGCAGCAGGTTATAGTCTTATTGACGTTGGTGTGGGATAA 4794 0.4095 MACEEVANSRPLFLTIYTVVIVGIVFSSFYIFSALYSSSTNPAAWSSFSPHTNDDPHLTDKILNSSHSATVHVAPSPSQETQHVSTRPILNVPPVSKKMPPLKSFRLTKKLVQQRVKDNIIIVTFGNYAFMDFILTWVKQLNDLGVSNYLVGAMDTELLEALYWKGVPVFDMGSHMSTVDVGWGSPTFHKMGREKVILINSILPFGYELLMCDTDMVWLKNPLPYLARYPEADVLTSSDQVIPTVVDDRLEVWQEVGAAYNIGIFHWRPTESAKKLAKEWIELLLADDKIWDQNGFNDIVHRQLGPSVDEDSGLVYAYDGNLKLGILPSSIFCSGHTYFVQAMYQQLRLEPYAVHTTFQYAGTEGKRHRLREAMLFRDPPEYYNPPGGFLSFKPSIPKSLLLNGNHTIESHFTLINYQIKQIRAALAIASLLKRTLVMPPLWCRIDRLWFPHPGVLEGSMTRQPFLCPLDHVFEVNVMLKELPEEEFGPGIDIREYSILDNPSLPSEVKNSWLDVQLCKEGTQDCNASNNSTVGKVLKFPKHSNEETFIKVFSSFKDVKVIQFSSMQDAFTGFMDKESEDRFRKRVKHYTGIWCCVLDHNPGHIYYDMYWDEKPEWKPIPPQTSADDHPPCCQIHVPQCKTGFFIATIKKQVKMRTWVKHITTWDVQNLVLLRKRRSPSFRSFSSQNYLNGSFSNVQRHMVHILRYAPALLSCCCHRFCTGIQLFDEMPQRALHVRENHFELVVDCIKLCLKKPNILTVTVAHCAAVKIGVLTHLPTSTSLLTAYSKAGDFTSSRDLFDEITNRDVVAWNAIIAASLVNNCYMTAMEFFEKMIKAQTGFDSTTLLLMVSASLHVKNFDQGRAIHCVSIKHGMLVDVSLGNALIDMYAKCSDLSSSEHLFEEMEYTDVVSWNSIMRGSLYNGDPEKLLYYFKRMTLSEEIADHISLSCAISACSSLRELAFGQTIHGHGIKLGYNDSSRVSVANSLISLYSQCKDIESAETVFREIAYKDIVSWNAMLEGFASNEKINEVFDILVEMQTTGSFRPDIVTLTTILPICAQLMLSREGKTIHGFAIRRQMVYDHLPLLNCLIDMYSKCNLVEKAELLFHSTAKRDLVSWNTMISGYSQNKYSEEAQFFFRELLRRGPNCSSSTVFSILSSCNSLNGLNFGKSVHCWQLKSGFLNHILLINSLMHMYINCGDLTASFSILHENSALADIASWNTVIVGCGQGNHYQESLETFRLFRQEPPFAYDSITLVSVLSACANLELLIQGKSLHGLALKSPLGSDTRVQNSLITMYDRCRDINSARAVFKFCSTSNLCSWNCMISALSHNRECREALELFRHLQFKPNEFTMVSVLSACTQIGVLRHGKQVHARVFRSGFQDNSFISSALVDLYSNCGRLDTALQVFRHSVEKSESAWNSMISAYGYHGNSEKAIKLFHEMCDSGTRVTKSTFVSLLSACSHSGLVNQGLLYYDSMLEKYGVQPDTEHHVFVVDMLGRSGRLDDAYEFAKGLPSHASSGVWGTLLSACNYHGELKLGKQIAELLFEMEPQNVGYYISLSNMYVAAGSWKDATDLRQSIQDQGLRKAAGYSLIDVGVG* 1598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0689 1597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1414 1448 IPR002885 -
Lja2g0689 1597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1112 1146 IPR002885 -
Lja2g0689 1597 TIGRFAM PPR: pentatricopeptide repeat domain 1417 1447 IPR002885 -
Lja2g0689 1597 TIGRFAM PPR: pentatricopeptide repeat domain 1011 1045 IPR002885 -
Lja2g0689 1597 TIGRFAM PPR: pentatricopeptide repeat domain 1319 1344 IPR002885 -
Lja2g0689 1597 TIGRFAM PPR: pentatricopeptide repeat domain 1452 1486 IPR002885 -
Lja2g0689 1597 Gene3D Tetratricopeptide repeat domain 970 1063 IPR011990 GO:0005515
Lja2g0689 1597 Gene3D Tetratricopeptide repeat domain 1271 1367 IPR011990 GO:0005515
Lja2g0689 1597 Gene3D Tetratricopeptide repeat domain 1064 1165 IPR011990 GO:0005515
Lja2g0689 1597 Gene3D Tetratricopeptide repeat domain 1368 1468 IPR011990 GO:0005515
Lja2g0689 1597 Gene3D Tetratricopeptide repeat domain 759 858 IPR011990 GO:0005515
Lja2g0689 1597 Gene3D Tetratricopeptide repeat domain 1168 1270 IPR011990 GO:0005515
Lja2g0689 1597 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1009 1043 IPR002885 -
Lja2g0689 1597 Gene3D Tetratricopeptide repeat domain 1469 1590 IPR011990 GO:0005515
Lja2g0689 1597 Pfam PPR repeat 880 903 IPR002885 -
Lja2g0689 1597 Pfam PPR repeat 778 804 IPR002885 -
Lja2g0689 1597 Pfam PPR repeat 1319 1343 IPR002885 -
Lja2g0689 1597 Pfam PPR repeat 908 933 IPR002885 -
Lja2g0689 1597 Pfam PPR repeat 1114 1143 IPR002885 -
Lja2g0689 1597 Pfam PPR repeat 1086 1106 IPR002885 -
Lja2g0689 1597 Pfam PPR repeat 983 1005 IPR002885 -
Lja2g0689 1597 Pfam PPR repeat 1217 1241 IPR002885 -
Lja2g0689 1597 Pfam PPR repeat 807 834 IPR002885 -
Lja2g0689 1597 Pfam E motif 1531 1592 IPR046848 -
Lja2g0689 1597 Gene3D Tetratricopeptide repeat domain 859 969 IPR011990 GO:0005515
Lja2g0689 1597 PANTHER NUCLEOTIDE-DIPHOSPHO-SUGAR TRANSFERASE FAMILY PROTEIN 2 630 - -
Lja2g0689 1597 PANTHER ARABINOSYLTRANSFERASE XEG113 2 630 - -
Lja2g0689 1597 Pfam PPR repeat family 1008 1054 IPR002885 -
Lja2g0689 1597 Pfam PPR repeat family 1416 1461 IPR002885 -
Lja2g0689 1597 Pfam Nucleotide-diphospho-sugar transferase 146 370 IPR005069 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0689 Lja-Chr2 6236549 6247539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0689 715 953 Glycoside Hydrolase AT3G49170 24.066 3.09e-18 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0689 - K20784 gmx:100775736 1459.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0689 2 6236549 6247539 Lja2g0689 2 6236549 6247539 ECH