Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0681 ATGGCGGGAGTTAGGATTTTCGGTGCATACGCTGCCAGAGCTCTCATGGCGGCGGCGTCCACGGCGAAAGGCGCGGTCAAGAAGGAAGTCGCGCGCGCCCCGCCCAAGAAGCCTGCTACTGCTGCTCCCAGTAAAACCAAGAGCAGCACTAGCGGCATTCAGAAGGTGGTTCCCGTCTCTTCCGAGCTCGGAAAGTTTCTCGGTTCGCCGGAAGTCTCCAGAACCGACGCTGTCAAGAGAGTCTGGGAGTACATCAAGCTGCAGAATCTCCAGAATCCTACAAATAAGAAGGAAATCTTTTGTGATGACAAACTGAAGACCATCTTTGAAGGGAAAGATAAAGTGGGATTCACAGAGATTGCCAGATTGCTGTCTAACCATTTTGTGAAATCAGTCTAA 399 0.5163 MAGVRIFGAYAARALMAAASTAKGAVKKEVARAPPKKPATAAPSKTKSSTSGIQKVVPVSSELGKFLGSPEVSRTDAVKRVWEYIKLQNLQNPTNKKEIFCDDKLKTIFEGKDKVGFTEIARLLSNHFVKSV* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0681 132 Gene3D SWIB/MDM2 domain 46 132 IPR036885 -
Lja2g0681 132 ProSiteProfiles SWIB/MDM2 domain profile. 52 130 IPR003121 -
Lja2g0681 132 SMART swib_2 53 130 IPR019835 -
Lja2g0681 132 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 4 131 - -
Lja2g0681 132 MobiDBLite consensus disorder prediction 26 53 - -
Lja2g0681 132 SUPERFAMILY SWIB/MDM2 domain 48 130 IPR036885 -
Lja2g0681 132 CDD SWIB-MDM2_like 57 128 - -
Lja2g0681 132 Pfam SWIB/MDM2 domain 57 128 IPR003121 -
Lja2g0681 132 PANTHER PROTEIN TRI1 4 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0681 Lja-Chr2 6176436 6178173 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lja2g0681 SWIB 7.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0681 - - gmx:100795307 172.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0681 2 6176436 6178173 Lja2g0681 2 6176436 6178173 ECH