Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0673 ATGGTCCCCAAATCCATCATAACCACCTCAGCATCTCCACACCTCCCTCTGCTTAAAATATCCTCAGTTAGAATTGAAGAAAACCCCCAAACTCAAACAATCAGAACCACCCCTTCTCCCTCACTCCCAACCACCACCACCACCCAAAATCCCAGCAAACCACTGCTCAAGAAAACACCACCACCACCACCTTCCACACCATTCAATGCAAAGAGAAAACCACAACCACCACCTTCAGTGCCAGCACTACTCTTCAACGCATTCGACGACATCATCAACAACTTCATAGACCCTCCACTCAAACCCTCAGTAGACCCCAGACATGTCCTCTCCCAAAACTTTGCTCCGGTGAACGAGCTCCCCCCAACAGAATGCGACGTCGTACAAGGCACCCTTCCACCCTGCCTCGACGGCGCATACATCAGAAACGGCCCCAACCCGCAGCACCTCCCTAAAGGACCTTACCACCTCTTCGACGGCGACGGCATGCTCCACGCCCTCCGTATCTCACAAGGCAGAGCCACCCTCTGCAGCCGCTACGTCAAAACATACAAATACAAAATCGAAAACGACGCCGGTTACCCTCTCATCCCCAACGTCTTCTCCGGCTTCAACACACTAGTAGCCTCCGCCGCACGCGGGTCTCTCACGGCGGCGAGGGTTATCGCCGGTCAGTACAACCCTGCCAACGGCATTGGGTTGGCGAACACGAGCTTAGCTCTGTTTGGGAACAAGCTCTACGCGTTGGGAGAATCGGATCTACCTTATGAGATCAGAATCGCCAACAACGGTGACATTGAAACCCTCGGCCGTCGCGATTTCGACGGGAAACTCACCATGAGCATGACGGCGCATCCCAAAATCGACCCTGATTCCGGCGAGTGCTTCGCTTTTCGTTACGGCCCTGTTCCTCCGTTCCTCACCTACTTCCGGTTCGACCCCGACGGGAAGAAGCACCCTGACGTCCCTGTTTTCTCCATGACCAGACCTTCGTTTCTCCACGATTTCGCCATCACGAAGAAGTACGCTATCTTCACCGACATTCAGCTCGGGATGAATCCATTGGACATGATCTCCGGCGGGTCGCCGATCGGGTCGGATCCGGCCAAGGTTTCCCGGATCGGGATTCTGCCTCGCTACGCGAGGGATGAGTCGGAGATGAAGTGGTTCGACGTGCCGGGTTTCAACATTGTTCATGCGATCAACGCGTGGGAGGAGGAGGATGGGAAGACGGTGACGCTGGTGGCGCCGAATATTCTGTCGGTGGAGCACACGATGGAGAGGCTGGAGCTGGTGCATGCGGTGGTGGAGAAGGTGAGGATTGACATGGAGACTGGGTTCGTGACGAGGAAGCCATTGTCGACGAGGAACCTTGATTTCGGAGTGATAAACCAGAGATTCTTGGGGAGGAAGAGCAGGTTTGTGTACGCGGCGGTGGGGGATCCGATGCCGAAGATTTCTGGGGTGGTGAAGATTGACGTGGTGAGTGGGGAGACGGTGGGGTGTAGGATGTACGGCGAGGGTTGCTACGGCGGCGAGCCGTTTTTTGTGGCGGCGGGGGAGGAGGTGGAAGAGGAGGATGATGGGTACTTGGTGAGTTACGTGCATGATGAGGGGAAGGGGGAGTCGAGGTTTTTGGTGATGGATGCTCAGTCGCCGGAGCTGGAGGTTGTGGCGGCGGTGAAGCTTCCGAGGAGGGTGCCGTACGGGTTTCATGGACTGTTTGTGAGTGACAGTGAGCTCAGAAAGGTGTCGCTGTCATAA 1764 0.5578 MVPKSIITTSASPHLPLLKISSVRIEENPQTQTIRTTPSPSLPTTTTTQNPSKPLLKKTPPPPPSTPFNAKRKPQPPPSVPALLFNAFDDIINNFIDPPLKPSVDPRHVLSQNFAPVNELPPTECDVVQGTLPPCLDGAYIRNGPNPQHLPKGPYHLFDGDGMLHALRISQGRATLCSRYVKTYKYKIENDAGYPLIPNVFSGFNTLVASAARGSLTAARVIAGQYNPANGIGLANTSLALFGNKLYALGESDLPYEIRIANNGDIETLGRRDFDGKLTMSMTAHPKIDPDSGECFAFRYGPVPPFLTYFRFDPDGKKHPDVPVFSMTRPSFLHDFAITKKYAIFTDIQLGMNPLDMISGGSPIGSDPAKVSRIGILPRYARDESEMKWFDVPGFNIVHAINAWEEEDGKTVTLVAPNILSVEHTMERLELVHAVVEKVRIDMETGFVTRKPLSTRNLDFGVINQRFLGRKSRFVYAAVGDPMPKISGVVKIDVVSGETVGCRMYGEGCYGGEPFFVAAGEEVEEEDDGYLVSYVHDEGKGESRFLVMDAQSPELEVVAAVKLPRRVPYGFHGLFVSDSELRKVSLS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0673 587 Pfam Retinal pigment epithelial membrane protein 116 577 IPR004294 GO:0016702
Lja2g0673 587 MobiDBLite consensus disorder prediction 24 80 - -
Lja2g0673 587 PANTHER BETA-CAROTENE DIOXYGENASE 16 583 IPR004294 GO:0016702
Lja2g0673 587 MobiDBLite consensus disorder prediction 55 80 - -
Lja2g0673 587 MobiDBLite consensus disorder prediction 24 54 - -
Lja2g0673 587 PANTHER CAROTENOID CLEAVAGE DIOXYGENASE 4, CHLOROPLASTIC-RELATED 16 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0673 Lja-Chr2 6084713 6086995 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0673 K09840 - gmx:100777875 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0673 2 6084713 6086995 Lja2g0673 2 6084713 6086995 ECH