Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0654 ATGGACGTTCGCCGGCGACCCACCAACGCCGCCGTCGTGCGTCCACCTCCCGCCGCCAAACACCCAAAAATGAAGAAGAATGAATCACAGACATCTCTGTACGTCACCAACACCGTCTTCTTCACTCTCTTCTTCTCCGTCGCCTACTTCCTCCTCCACCGTTGGCGCGAGAAGATCCGCACCTCCACCCCTCTCCACTTCGTCACGGTTTCCGAGATCGCCGCCATCCTCTCCCTCTTCGCTTCCGTCATCTACCTCACCTCCTTCTTCGGCATTGGCTTCATCCTCCACCCCTTCGCCGCTTCCCGCCCCGTCCCCGGTGAAGACGACGACGAAGAAGAACTCGTCGCCGACATTTCCCCCTGCCTCAACAATCTCCCCCCGCCGCCGCTCAAAATCGCCAACGGCAACGGCAAATCCCTCTCACCTCCGTCGCCGACGGCGACAACAACTACTCTGTCCTCGGAGGACGAGGAGGTTATCCGGGAGGTGGTGTCGGGGTCAATCCCGTCGTACTCGCTGGAAACGAAGCTCGGGGATTGCCGGCGGGCGGCGGTGATTCGTCACGAGGCGGTGGAGAGGGTGGTGGGGAGGTCGCTGGAGGGTTTACCGGTGGAAGGGTTTGATTATGAGTCGATATTGGGGCAGTGCTGTGAGATGCCGATTGGGTTCATTCAGATTCCGGTTGGGGTGGCAGGGCCGCTGTTACTCGACGGGAAAGAGTACACCGTCCCCATGGCCACCACGGAGGGTTGTCTGGTGGCGAGCACCAACAGAGGCTGCAAGGCTATTTACGTTTCCGGTGGTGCTTCCGCGGTGCTCCTCCGTGATGGCATGACCAGGGCACCTGTTGTCAGGTTCAGCTCCGCCAAAAGGGCTGCTCAGTTGAAGTTCTACTTGGAAGACCCTGAGAATTTTGATTCTCTCGCTCTCACTTTCAACAAGTCAAGTAGGTTTGCAAAGTTGCAGAGTATTAAGCCTGCAATAGTAGGCAAGAATTTGTACATTAGATTCTGTTGCAGCACTGGAGATGCCATGGGGATGAACATGGTTTCCAAAGGTGTCCAAAACGTACTTGCTTTCCTTCAAGAGGACTTCCCTGACATGGATGTTATTGGCATTTCTGGAAATTTCTGCTCGGACAAGAAAGCAGCAGCTGTGAACTGGATTGAAGGGCGTGGTAAGTCTGTGGTGTGCGAGGCCGTAATTAAGGAAGAGGTGGTGAAGAAAGTGTTGAAGACCAGCGTGGAGGCCTTGGTTGAGCTTAACATGCTCAAAAACCTTACTGGCTCAGCCGTGGCAGGTGCTCTTGGTGGCTTCAATGCCCATGCTAGCAATATTGTTTCTGCTGTCTACTTGGCCACGGGTCAGGATCCTGCTCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAGGCCGTTAACGATGGCAGAGATCTTCACGTCTCCGTCACCATGCCTTCCATTGAGGTGGGCACAGTTGGTGGGGGCACACAGCTCGCATCTCAATCAGCATGTCTTAATTTACTTGGTGTGAAGGGTGCCAGCAAGGAGTTGCCGGGTGCGAATTCTAGGCAACTGGCAACTATAATAGCTGGCGCAGTCCTCGCCGGGGAACTCTCCCTCATGTCTGCAATTGCAGCAGGGCAGCTTGTGAAGAGCCACATGAAATACAACAGGTCTAGCAAGGATATCACCAAAGTTGCATGA 1713 0.5487 MDVRRRPTNAAVVRPPPAAKHPKMKKNESQTSLYVTNTVFFTLFFSVAYFLLHRWREKIRTSTPLHFVTVSEIAAILSLFASVIYLTSFFGIGFILHPFAASRPVPGEDDDEEELVADISPCLNNLPPPPLKIANGNGKSLSPPSPTATTTTLSSEDEEVIREVVSGSIPSYSLETKLGDCRRAAVIRHEAVERVVGRSLEGLPVEGFDYESILGQCCEMPIGFIQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYVSGGASAVLLRDGMTRAPVVRFSSAKRAAQLKFYLEDPENFDSLALTFNKSSRFAKLQSIKPAIVGKNLYIRFCCSTGDAMGMNMVSKGVQNVLAFLQEDFPDMDVIGISGNFCSDKKAAAVNWIEGRGKSVVCEAVIKEEVVKKVLKTSVEALVELNMLKNLTGSAVAGALGGFNAHASNIVSAVYLATGQDPAQNVESSHCITMMEAVNDGRDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKELPGANSRQLATIIAGAVLAGELSLMSAIAAGQLVKSHMKYNRSSKDITKVA* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0654 570 MobiDBLite consensus disorder prediction 138 155 - -
Lja2g0654 570 Pfam Hydroxymethylglutaryl-coenzyme A reductase 186 561 IPR002202 GO:0004420|GO:0015936
Lja2g0654 570 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 278 394 IPR009023 -
Lja2g0654 570 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 546 559 IPR023076 GO:0004420
Lja2g0654 570 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A REDUCTASE 1 570 - -
Lja2g0654 570 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 492 499 IPR023076 GO:0004420
Lja2g0654 570 Gene3D - 152 227 IPR023282 GO:0004420
Lja2g0654 570 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 157 561 IPR002202 GO:0004420|GO:0015936
Lja2g0654 570 TIGRFAM HMG_CoA_R_NADP: hydroxymethylglutaryl-CoA reductase (NADPH) 157 561 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lja2g0654 570 MobiDBLite consensus disorder prediction 134 157 - -
Lja2g0654 570 CDD HMG-CoA_reductase_classI 158 561 IPR004554 GO:0004420|GO:0005515|GO:0008299
Lja2g0654 570 Gene3D - 278 394 IPR009023 -
Lja2g0654 570 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 570 IPR002202 GO:0004420|GO:0015936
Lja2g0654 570 Gene3D - 228 548 IPR023074 GO:0004420
Lja2g0654 570 MobiDBLite consensus disorder prediction 1 27 - -
Lja2g0654 570 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 337 351 IPR023076 GO:0004420
Lja2g0654 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 217 238 IPR002202 GO:0004420|GO:0015936
Lja2g0654 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 375 400 IPR002202 GO:0004420|GO:0015936
Lja2g0654 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 335 353 IPR002202 GO:0004420|GO:0015936
Lja2g0654 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 480 501 IPR002202 GO:0004420|GO:0015936
Lja2g0654 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 244 264 IPR002202 GO:0004420|GO:0015936
Lja2g0654 570 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 426 452 IPR002202 GO:0004420|GO:0015936
Lja2g0654 570 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 150 550 IPR009029 GO:0015936|GO:0016616
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0654 2 567 Lipid Metabolism Gene Families AT1G76490 70.899 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0654 K00021 - gmx:100790033 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0654 2 5931443 5935641 Lja2g0654 2 5931443 5935641 ECH