Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0638 ATGGCGGCGATCATAAGGCCTTTGCCGGAGGCTGTAAGAAGCTCAGTGCGTTCCGGCATTTTCTTGTTCGACTTGACGCGAGTCGTGGAGGAACTGGTTTTCAATAGTCTCGATGCTCGTGCTACGAAGGTATCAGTGTTTGTTAATGTTGGGAGCTGCTATTTGAAAGTTGTAGATGATGGAGGTGGAATTACTCGGGATGGATTGGAATTGGTGGGAGAAAGATATGCAACGTCAAAATTTCTTAATTTGGCTGACCTGAATGCCATTAGTGGAAACTTTGGATTTCGTGGGGAAGCTTTGGCTTCCATTTCTGAAGTCTCTTTGTTGGAAATTGTAACAAGAACCTATGGAAGGCCAAATGGATATCGAAAAGTATTGAAGGGGTGCAAGTGTTTATATCTTGGCCTTGATGATGATAGAAAGGAAGTGGGCACGACAGTTGTTGTTCGTGAATTATTTTACAACCAACCGGTTCGGAGGAAATACATGCAATCCAGCCCCAATAAGGTACTGCAATTAATCAAGAAAAGTGCAATGCGGCTTGCCCTTGTGCACTCAAGTATTTCCTTCAATGTTGTTGATATTGAAAGAGAAGCTGAGCTCTTTTGCACACATTCTGCTTCTTCTCCGCTATCACTTGTAACCAGTGGCTTTGGGTTGGAGGTAACAAGCTCTCTTCATCAGTTAGATGTTGAGAATGATACCATAAAGCTTTCTGGATACGTATCCAGTCCTTGCAATACTTTGCAAATGAAGGCCTTACAGTATGTCTATATCAACTCACAGTTCGTTTGCAAGGGCCCAATTCATAAACTTCTGAGTCAACTGGCTATTAAGTTTGAGAATCTGAAGTCATTGAACACTGATAATGAATTCCAAAACAAAAAGAGAAGTAGGTCTCAACCTTGTCCAGCATATATCTTGAATTTAAGATGCCCCCGGTCTTTGTATGATTTGACCTTTGAGCCATCCAAAACTTATGTTAAATTCAAGGATTGGGTTCCAATATTGAACTTCATTGAGAAGGTCATCAGACAATTCTGGGAGGACAGCATAGCTGGTGGAGATTTCTCCAATCAAGGAACTTACATGGTACAAGAAGATCAACTGGGGAAAGTAGATGCAGCTGTCAAAATTGTTTCAGCAGAAGCAGATACATCAAAATTTGGAAAACAAAATCCTAAGGATTGCCTAGATCTCTTCTTTTCGGCTTCAAACAAGTTAACTGAAGATGACTATCATGAATCCAGCAGCGAAGATGTTAGAACCTCTCTTGATTACTTACAACGAGGGACTTCAGTGTTCAAAGAGCAACAAAGTAAAGGAGACTTTCTTTGTCAGACTGATTATTTCGACAATTTACTGGATGATCCTTATACCAAATGCATGTCCACTATGTTGAGAAAGCGCGACAGTTTGATGAGTGATAACAATCATTTATTGCAAGGAGATTACTTTTTGGATGGCACCTTTCCTGCTGCCGAAAGTTTCTATGACAATGTACCTTTTGACAAACCGAGTTCTTCACGTGGAATCAAATTTAATGAAGTAGAAGTCAGAATGGTTAGTGGATCATTTGAAGGTAATTTAGTTAATGATTTCCGTAGGTTTGGTTCTGGTGTAGAGATTGGTGGGGATTTTCAAAAGCCTTTTCTGAAGAGCTGTACTACGCGAAAAGGCAGTACCCTGCATGAGAAGGCTCTGCTTGTAAACGACGAACATGAACTCCAAACTGATAGCTTTTTTATCAAGAAAAATCTGGAGGAGGATTATCACAGTGGTAAGGATATGTTCGCTGATCCCTGTCTAGAAGTTGCAAAAAAATTAAAGACATCTAAGGATACTGATTTTCCCTTTAGAGCGTGGTCTGAAGAAAATTGTCTTCCTCCAGTTTCATGCAATTCAGGAACACAAATAAGAAGCTCTGGGTCTGATGATCAGTTGTTAAATTCTGAATGGTTTCCTGTCTGTCTTGATCCTTCATCTCAAGACACTGCATTGGGTGTTCATCATACAACTGATATTGATGATATTGGAGTATCTAGAGACTATAAAAGGATCCGTTGTACAAAACTTTTTTATGACAAAGTAAATGAATGCGACTTCAGCTATATGTCAAGGAATGCAAGCCAACATCACTGTCTATCAAGTTTTGCTAATAACGGATTTAATTTCGATGGTGCTGTTGATCGTGATGACATATTTGACAGATTGGTTGACTGGACTGACTTTGGTGATACATATTTTACAAAAAGGCCAGATATTTTAGATGAGGAGCAGGATTGGCTGTTGCATGAATCAAGTGTTAGAAACTGCAATAGGTCTAGCACTGACAAAGGCAAAAGGGAGCATTTTAGACATACATCTTTGGGAAAGAATCATGAAAGATCTAAAAGAAGCTCTTCAGCTCCTCCATTTCATAGAAGTAAAAGGAGGTTCATCTGCTTACATCAGGCTCCAGAAACAATTGCCAAAAGATCTCCTGGCCGAGCATCCAGCCCTATTTTCAATCATCACGAAGCTAGTGATCCTCAACAGTCTCCTGGTGCTCTTCACACAAGCACTGATGATCTTCTATTGCAAGAATTCAAAACTAATGTGAAACAGAGTTCAGAGGTTCTGGGAGATTCAAAGGTCAATGACATTGCAGAGACTGATGGGTTTGAGAGTTTCAGCATTCAAAACAGTGATCCATTAAGGGAATTGATCTCTGGGGAAGTGCAAGATTCTGTAGATTACAGGACCAAATGGAGGGACTGCTCACCTCAAATTCCAAAGGATGATAAACTGGTCGATACTCAAAGTCAACACAACATACTTGACATCTCTTCTGGATTCTTGCATCTTGCTGGAGATTCATTGATTCCTGAAACAATCAGTAAGAAATGCCTAGATGATGCCAAAGTTCTCCATCAGGTGGATAAGAAATTTATTCCAATTGTGGCTGGCAGAACCCTAGCTATTATTGATCAGCATGCTGCAGATGAAAGAATCAGACTGGAAGAATTGCGTCAAAAGGTATTATCTGGAGAAGCAAAATCAATAACCTATCTAGATGCTGAACAGGAACTGGTGCTGCCAGAGATTGGTTATCAACTACTTCATAATTACAGTGAACAGATTAAAGATTGGGGCTGGATCTGCAACATCCATGGTCAACATTCTGAATCCTTTAGAAGGAATTTGGATATTCTCAACAGACACCAAATGGCCTTCACGCTTATTGCGGTACCGTGTATTTTAGGTGCCAATTTAAATGATGTTGATCTTTTAGAATATCTTCAGCAGCTTGCTGACACTGATGGATCATCAACAATGCCACCCTCCGTTATACGAGTCCTAAATTCAAAAGCATGCCGTGGTGCAATTATGTTTGGGGATTCATTGCTACCGTCAGAATGTTCCCTTATAGTTGAAGAGTTGAGGCTTACGTCACTTTGTTTCCAATGTGCTCATGGGCGACCAACAACTGTTCCTCTGGTCAACTTGGAGGCACTACATAATCAGATACCCAAGCTTGGACGGATGAATGATTACTCAAGTGACAAGTGGCATGGATTACAAAGATGCGAAATAAGTTTAGAACGTGCCGCGCGACGTTTATCTTGTGATTAG 3618 0.4038 MAAIIRPLPEAVRSSVRSGIFLFDLTRVVEELVFNSLDARATKVSVFVNVGSCYLKVVDDGGGITRDGLELVGERYATSKFLNLADLNAISGNFGFRGEALASISEVSLLEIVTRTYGRPNGYRKVLKGCKCLYLGLDDDRKEVGTTVVVRELFYNQPVRRKYMQSSPNKVLQLIKKSAMRLALVHSSISFNVVDIEREAELFCTHSASSPLSLVTSGFGLEVTSSLHQLDVENDTIKLSGYVSSPCNTLQMKALQYVYINSQFVCKGPIHKLLSQLAIKFENLKSLNTDNEFQNKKRSRSQPCPAYILNLRCPRSLYDLTFEPSKTYVKFKDWVPILNFIEKVIRQFWEDSIAGGDFSNQGTYMVQEDQLGKVDAAVKIVSAEADTSKFGKQNPKDCLDLFFSASNKLTEDDYHESSSEDVRTSLDYLQRGTSVFKEQQSKGDFLCQTDYFDNLLDDPYTKCMSTMLRKRDSLMSDNNHLLQGDYFLDGTFPAAESFYDNVPFDKPSSSRGIKFNEVEVRMVSGSFEGNLVNDFRRFGSGVEIGGDFQKPFLKSCTTRKGSTLHEKALLVNDEHELQTDSFFIKKNLEEDYHSGKDMFADPCLEVAKKLKTSKDTDFPFRAWSEENCLPPVSCNSGTQIRSSGSDDQLLNSEWFPVCLDPSSQDTALGVHHTTDIDDIGVSRDYKRIRCTKLFYDKVNECDFSYMSRNASQHHCLSSFANNGFNFDGAVDRDDIFDRLVDWTDFGDTYFTKRPDILDEEQDWLLHESSVRNCNRSSTDKGKREHFRHTSLGKNHERSKRSSSAPPFHRSKRRFICLHQAPETIAKRSPGRASSPIFNHHEASDPQQSPGALHTSTDDLLLQEFKTNVKQSSEVLGDSKVNDIAETDGFESFSIQNSDPLRELISGEVQDSVDYRTKWRDCSPQIPKDDKLVDTQSQHNILDISSGFLHLAGDSLIPETISKKCLDDAKVLHQVDKKFIPIVAGRTLAIIDQHAADERIRLEELRQKVLSGEAKSITYLDAEQELVLPEIGYQLLHNYSEQIKDWGWICNIHGQHSESFRRNLDILNRHQMAFTLIAVPCILGANLNDVDLLEYLQQLADTDGSSTMPPSVIRVLNSKACRGAIMFGDSLLPSECSLIVEELRLTSLCFQCAHGRPTTVPLVNLEALHNQIPKLGRMNDYSSDKWHGLQRCEISLERAARRLSCD* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0638 1205 MobiDBLite consensus disorder prediction 773 807 - -
Lja2g0638 1205 Gene3D - 973 1161 IPR042120 -
Lja2g0638 1205 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 5 1166 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Lja2g0638 1205 SUPERFAMILY DNA mismatch repair protein MutL 968 1161 IPR037198 -
Lja2g0638 1205 SMART DNA_mis_repair_2 215 350 IPR013507 GO:0005524|GO:0006298|GO:0030983
Lja2g0638 1205 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 23 204 IPR036890 -
Lja2g0638 1205 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 26 119 - -
Lja2g0638 1205 MobiDBLite consensus disorder prediction 839 853 - -
Lja2g0638 1205 Pfam MutL C terminal dimerisation domain 969 1130 IPR014790 GO:0005524|GO:0006298
Lja2g0638 1205 MobiDBLite consensus disorder prediction 776 803 - -
Lja2g0638 1205 CDD HATPase_MutL-MLH-PMS-like 12 199 - -
Lja2g0638 1205 Pfam DNA mismatch repair protein, C-terminal domain 219 348 IPR013507 GO:0005524|GO:0006298|GO:0030983
Lja2g0638 1205 PANTHER DNA MISMATCH REPAIR PROTEIN MLH3-RELATED 5 1166 IPR028830 GO:0006298
Lja2g0638 1205 Gene3D - 215 353 IPR014721 -
Lja2g0638 1205 SUPERFAMILY Ribosomal protein S5 domain 2-like 200 350 IPR020568 -
Lja2g0638 1205 SMART MutL_C_2 970 1130 IPR014790 GO:0005524|GO:0006298
Lja2g0638 1205 TIGRFAM mutl: DNA mismatch repair protein MutL 5 329 IPR002099 GO:0005524|GO:0006298|GO:0030983
Lja2g0638 1205 MobiDBLite consensus disorder prediction 825 853 - -
Lja2g0638 1205 ProSitePatterns DNA mismatch repair proteins mutL / hexB / PMS1 signature. 95 101 IPR014762 -
Lja2g0638 1205 Gene3D - 1014 1125 IPR042121 -
Lja2g0638 1205 Gene3D - 4 210 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0638 Lja-Chr2 5722087 5731032 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0638 K08739 - gmx:100788019 1696.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0638 2 5722087 5731032 Lja2g0638 2 5722087 5731032 ECH