Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0630 ATGGGCCAAGACGAAGAAGCCTTGTCTTACCCTCCGATTGACCCGGTGAACTACGATCTCATCATCGTCGGCACAGGCCTATCGGAATCCATCATCGCTGCAGCCGCTTCCGCCGTCGGAAAGACAGTCCTGCACCTCGACCCCAACTCCTTCTACGGCAGCCACTTCGCTTCTCTCTCCATCGACGAATTCACCTCTTACCTCAACTCCCCTCCCACATCCATCCCCACCGCCGCCGCATCTGGCGATTCCGATTACGCCGTCGTGGACCTCGTCAGGCAACCACTATGCTCCGACGCGGAAATCGTTTCGCACGACGAAACCACGTTTCTGCGAGAAAATTCGAGGAAATTCAATCTCGATTTGGGAGGGCCTAGGGCATTGTTCAGCGCGGATAAGACCATCGATCTGTTGTTGAAGTCCGGTGCGGCGATGTACTTGGAGTTCAAAGGCATCGATGCGACGCTCGTCTACGAAGCGAATGGCGGATTGGTCGACGTGCCGGATTCTCGCGGCGCGATTTTCAGAGATAAGAACCTCTCGCTGAAGGAGAAGAACCAATTGATGAGATTCTTCAAGCTCGTTCAGCAACACCTGGGTGATAATCAAGATGAGAAAATCTCGGAGGAAGATATGGAGAGTCCGTTTGTTAGTTTCTTGGAGAAAATGCGGTTGCCGCCGAAGATAAAATCGTTTCTTTTGTATGCTATAGCTATGTTAGATTATGATCAAGAGAATAGTGAGGTTTGTAAGGATGTATTTAAAACAAAGGATGGAATAGATCGTCTAGCACAATACAGCTCATCTGTTGGAAGGTATCCCAATGCACCAGGGGCTTTGCTTTATCCTACTTATGGTGAAGGAGAACTTCCACAAGCTTTTTGTCGCCGTGCTGCTGTCAAAGGTTGCATCCATGTTCTCAGAATGCCAGTCATTTCTCTGCTTATTGATAAGGTTACTGGGCTTTATAAAGGTGTTAGATTAGCTTCAGGTCAGGATTTATACAGCCATCAAATAATCCTAGACCCATGCTTTACAATTCCTTCCCCATTATCGTTATCTCCTGGAGATTTTCCCAGTGAAAGGCTCCAAATGTTGAGTCTGAGAGATATTAAAGGAATGGTCGCTAGGGGAATATGCATCACAAGGAATTCCATAAAGCCAGATGTATCTAATTGCTCGGTGGTGTGTCCTCCTAGATCATTGTATCCGGAACAGGTGACATCAATCAGAGCTCTTCAGTTAGGATCAAATGTTGCTGTTTGTCCTGCGGGCACCTTTGTTTTATACTTTTCCACTTTGTGCAATGATGCCGATGAAGGAAAGAAGTTAATAAAAGCAGCCATGGATGCCCTTCTTACACTGCCCGGATGTGGAAACTCTGAAAACATTCCCATTGTTCAAAGTGATAGTGCAGATGTAAAACCCAATGTGCTCTGGAGTGCACTGTATATTCAGAAATTGACTACGAGTAAATTTGAATTTATCAGCTCCACTTCTACGCCGGATGGAAATCTAAACTACAATGACATTTTAGATGCAACCGAGAAGCTATTTGGTCAAATGTACCCCAATGAAGAATTCTTTCCACAGACAACATCACCTGAAGACAACACAGACGAAAATGGGGTAACTCTGGATGACTAA 1647 0.4602 MGQDEEALSYPPIDPVNYDLIIVGTGLSESIIAAAASAVGKTVLHLDPNSFYGSHFASLSIDEFTSYLNSPPTSIPTAAASGDSDYAVVDLVRQPLCSDAEIVSHDETTFLRENSRKFNLDLGGPRALFSADKTIDLLLKSGAAMYLEFKGIDATLVYEANGGLVDVPDSRGAIFRDKNLSLKEKNQLMRFFKLVQQHLGDNQDEKISEEDMESPFVSFLEKMRLPPKIKSFLLYAIAMLDYDQENSEVCKDVFKTKDGIDRLAQYSSSVGRYPNAPGALLYPTYGEGELPQAFCRRAAVKGCIHVLRMPVISLLIDKVTGLYKGVRLASGQDLYSHQIILDPCFTIPSPLSLSPGDFPSERLQMLSLRDIKGMVARGICITRNSIKPDVSNCSVVCPPRSLYPEQVTSIRALQLGSNVAVCPAGTFVLYFSTLCNDADEGKKLIKAAMDALLTLPGCGNSENIPIVQSDSADVKPNVLWSALYIQKLTTSKFEFISSTSTPDGNLNYNDILDATEKLFGQMYPNEEFFPQTTSPEDNTDENGVTLDD* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0630 548 PANTHER RAB GDP-DISSOCIATION INHIBITOR 14 537 IPR018203 GO:0005092|GO:0007264
Lja2g0630 548 Gene3D - 15 528 IPR036188 -
Lja2g0630 548 Pfam GDP dissociation inhibitor 17 103 IPR018203 GO:0005092|GO:0007264
Lja2g0630 548 Pfam GDP dissociation inhibitor 114 452 IPR018203 GO:0005092|GO:0007264
Lja2g0630 548 PANTHER RAB PROTEINS GERANYLGERANYLTRANSFERASE COMPONENT A 14 537 - -
Lja2g0630 548 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 95 488 - -
Lja2g0630 548 SUPERFAMILY FAD/NAD(P)-binding domain 16 342 IPR036188 -
Lja2g0630 548 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 167 279 - -
Lja2g0630 548 SUPERFAMILY FAD-linked reductases, C-terminal domain 372 490 - -
Lja2g0630 548 MobiDBLite consensus disorder prediction 527 548 - -
Lja2g0630 548 PRINTS Rab GDI/REP protein family signature 37 54 IPR018203 GO:0005092|GO:0007264
Lja2g0630 548 PRINTS Rab GDI/REP protein family signature 184 199 IPR018203 GO:0005092|GO:0007264
Lja2g0630 548 PRINTS Rab GDI/REP protein family signature 286 307 IPR018203 GO:0005092|GO:0007264
Lja2g0630 548 PRINTS Rab GDI/REP protein family signature 19 37 IPR018203 GO:0005092|GO:0007264
Lja2g0630 548 PRINTS Rab GDI/REP protein family signature 134 150 IPR018203 GO:0005092|GO:0007264
Lja2g0630 548 PIRSF Rab_ger_ger_transf_A_euk 4 82 IPR001738 GO:0005968|GO:0006886|GO:0018344
Lja2g0630 548 PIRSF Rab_ger_ger_transf_A_euk 90 545 IPR001738 GO:0005968|GO:0006886|GO:0018344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0630 K23460 - gmx:100795946 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0630 2 5667172 5672612 Lja2g0630 2 5667172 5672612 ECH