Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0628 ATGAGTGGATTCTGTGCTGTGCCTCAGCTTGAACCATTTTTGCTATCACTAGCAAAGTCATCAAAGTCCATAACACTGAAACAATGCAACCAAATCCATGCAAAGCTCATAGTCACCCAATGCATTTCACAAACCCACTTAGCCAACACCCTTTTGAGTTTCTACTCAAAATCTTCCCACTTTCGCCATGCCCACCTTCTGCTCGACCAAATGCCTCACAGGAATGTTGTTACATGGACAACCTTAATTTCCTCGCACCTTCGAGCTGGGTCTGTTCCAAAAGCATTCCAGTTGTTCAATGACATGCGTGTGATGGATGAGAGACCCAATGAGTACACCTTCTCTGTTCTGCTTCGTGCTTGTGCCACCCCTGCTTTGTGGAATGTGGGGTTGCAGATTCATGGTGTGCTCGTCCGGTCTGGGCTTGAGAGAGACAAGTTTGCTGGGAGCTCTTTGGTGTATATGTACTCCAACAATGGCAGTAACCTCAGGGATGCATGTTGTGTTTTTCATGACTTGTTGGAGAGAGACCTTGTTGCCTGGAATGTTATGATTTCTGGGTTTGCTCAAGTTGGAGACTTCTGTATGGTTCAGAGGTTGTTTTCTGAAATGTGGGAGGTAGAAGGATTGAAACCTGATAATAGAACTTTTGTTAGTTTGCTTAAATGTTGTTCTACATTGGGAGAGGTAATGCAAATCCACGGGCTTGCATCCAAGTTTGGTGCTGAAACCGATGCTGTAGTGAGTAGTGCTATGGTTGACTTGTATGCCAAGTGTGGGGACGTGAGTTCTTGCAGGAAAATCTTTGACTCAATGGAGGAGAAGGATAATTTTGTTTGGAGTTCTATCATTTCAGGCTATACCGTAAATAATAGAGGAGAGGAAGCTGTGCATTTCTTCAAGGACATGTGTAAGCAAAGGGTGAAACCAGATCAGCATGTGTTATCTAGCACTTTGAGAGCTTGTGTTGAAATAGAGGATTTGAACACAGGAGTTCAAGTGCATGGCCAAATGATAAAGAATGGGCATCAAAACGATTGTTTTGTAGCTAGTGTGTTGTTGACACTGTATGCCAATTTTGGTGGACTAAGGGATGCGGAAAAGTTGTTTAGAAGAATTGATGACAAAGATATTGTAGCATGGAACTCAATGATCTTGGCGCATGCTCAGCTGGGTCAGGGATCTAGTCGCTCTATGCAACTATTACAAGAACTTCATCGAACAACCTCCTTGCAAATTCAAGGTGCCACTCTAATTGCTATTTTGAAGTCTTGTAAGAATAAATCAGATTTACCTGCAGGTAGACAGATTCACTCACTTGTAATGAAATCAAGTGTAAGTCATCCTACTTTGGTTGGCAACGCATTAGTCCATATGTACTCTGAATGCGGACAGATTGGCGATGCGTTTAAAGCTTTTGTTGACATTGTGTGCAAAGATGATAGTTCTTGGAGTTCTATTATTGGAACTTATAAACAAAATGGAATGGAATCAGAAGCTTTAGAGTTATGCAAAGAGATGTTAGCTGAAGGAATCACTTTTACCAGTTATAGCCTTCCGCTGTGTATTTCATCTTGCTCACAACTTTTAGCTATAAATGTGGGTAAACAATTCCATGTTTTCGCTATCAAGTCCGGTTACAACCATGATGTCTATGTCGGGAGTTCCATCATAGATATGTATGCTAAATGTGGACACATGGAGGACTCAAAGAAAGTATTTGATGCACAAGTAAAGCCAAATGAAGTAATTTATAATGCCATGATTTGTGGATATGCACATCATGGACAAGCAAAGCAAGCAATAGAAATATTCACTATGTTAGAGAAGAATGGTGTAACCCCAAATCAAGTAACTTTCTTAGCTATGCTATCTGCTTGTAGCCATGCGGGTTATATAGAAGATACTTTGAATTTATTTACATTGATGCTTTACAAGTACAAGATTAAGCCAGAATCTGAGCACTATTCATGCCTAGTTGATGCCTATGGTCGGGCGGGAAGGCTGGAGGAAGCTTACCAAATAGTGCAAAAAGACGGAAGTGAATCAGCATGGAGGACATTGCTTAGTGCTTGTAGGAATCATAATAACACAAAAATTGGAGAAAAATCTGCAAAGAAGATGATTGAATTGAATCCCAGTGATCATGCTTCATATATTCTTCTTTCAAACATTTACATAGAAGAAGGAAAATGGGAAGAAGCTCGTGACTGCAGGGAGAAAATGGCTAAAACTGGTGTGAAGAAAGATCCAGGAAGTAGCTGGTTGATCTGA 2274 0.4085 MSGFCAVPQLEPFLLSLAKSSKSITLKQCNQIHAKLIVTQCISQTHLANTLLSFYSKSSHFRHAHLLLDQMPHRNVVTWTTLISSHLRAGSVPKAFQLFNDMRVMDERPNEYTFSVLLRACATPALWNVGLQIHGVLVRSGLERDKFAGSSLVYMYSNNGSNLRDACCVFHDLLERDLVAWNVMISGFAQVGDFCMVQRLFSEMWEVEGLKPDNRTFVSLLKCCSTLGEVMQIHGLASKFGAETDAVVSSAMVDLYAKCGDVSSCRKIFDSMEEKDNFVWSSIISGYTVNNRGEEAVHFFKDMCKQRVKPDQHVLSSTLRACVEIEDLNTGVQVHGQMIKNGHQNDCFVASVLLTLYANFGGLRDAEKLFRRIDDKDIVAWNSMILAHAQLGQGSSRSMQLLQELHRTTSLQIQGATLIAILKSCKNKSDLPAGRQIHSLVMKSSVSHPTLVGNALVHMYSECGQIGDAFKAFVDIVCKDDSSWSSIIGTYKQNGMESEALELCKEMLAEGITFTSYSLPLCISSCSQLLAINVGKQFHVFAIKSGYNHDVYVGSSIIDMYAKCGHMEDSKKVFDAQVKPNEVIYNAMICGYAHHGQAKQAIEIFTMLEKNGVTPNQVTFLAMLSACSHAGYIEDTLNLFTLMLYKYKIKPESEHYSCLVDAYGRAGRLEEAYQIVQKDGSESAWRTLLSACRNHNNTKIGEKSAKKMIELNPSDHASYILLSNIYIEEGKWEEARDCREKMAKTGVKKDPGSSWLI* 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0628 757 Gene3D Tetratricopeptide repeat domain 576 756 IPR011990 GO:0005515
Lja2g0628 757 Pfam E motif 695 756 IPR046848 -
Lja2g0628 757 TIGRFAM PPR: pentatricopeptide repeat domain 656 677 IPR002885 -
Lja2g0628 757 TIGRFAM PPR: pentatricopeptide repeat domain 483 513 IPR002885 -
Lja2g0628 757 TIGRFAM PPR: pentatricopeptide repeat domain 583 616 IPR002885 -
Lja2g0628 757 TIGRFAM PPR: pentatricopeptide repeat domain 279 311 IPR002885 -
Lja2g0628 757 TIGRFAM PPR: pentatricopeptide repeat domain 77 111 IPR002885 -
Lja2g0628 757 Gene3D Tetratricopeptide repeat domain 327 394 IPR011990 GO:0005515
Lja2g0628 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 715 749 IPR002885 -
Lja2g0628 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 177 212 IPR002885 -
Lja2g0628 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 581 615 IPR002885 -
Lja2g0628 757 PANTHER - 398 512 - -
Lja2g0628 757 PANTHER - 15 396 - -
Lja2g0628 757 PANTHER - 498 756 - -
Lja2g0628 757 PANTHER BNACNNG15330D PROTEIN 398 512 - -
Lja2g0628 757 PANTHER BNACNNG15330D PROTEIN 15 396 - -
Lja2g0628 757 PANTHER BNACNNG15330D PROTEIN 498 756 - -
Lja2g0628 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Lja2g0628 757 Gene3D Tetratricopeptide repeat domain 231 326 IPR011990 GO:0005515
Lja2g0628 757 Gene3D Tetratricopeptide repeat domain 17 126 IPR011990 GO:0005515
Lja2g0628 757 Gene3D Tetratricopeptide repeat domain 127 230 IPR011990 GO:0005515
Lja2g0628 757 Gene3D Tetratricopeptide repeat domain 395 534 IPR011990 GO:0005515
Lja2g0628 757 Pfam PPR repeat family 177 224 IPR002885 -
Lja2g0628 757 Pfam PPR repeat family 276 322 IPR002885 -
Lja2g0628 757 Pfam PPR repeat family 74 122 IPR002885 -
Lja2g0628 757 Pfam PPR repeat family 580 628 IPR002885 -
Lja2g0628 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Lja2g0628 757 Pfam PPR repeat 250 275 IPR002885 -
Lja2g0628 757 Pfam PPR repeat 555 575 IPR002885 -
Lja2g0628 757 Pfam PPR repeat 655 677 IPR002885 -
Lja2g0628 757 Pfam PPR repeat 483 512 IPR002885 -
Lja2g0628 757 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 310 IPR002885 -
Lja2g0628 757 SUPERFAMILY TPR-like 565 741 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0628 Lja-Chr2 5661478 5664292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0628 82 756 Glycoside Hydrolase AT3G49170 30.044 1.48e-108 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0628 - - lja:Lj2g3v1643290.1 1391.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0628 2 5661478 5664292 Lja2g0628 2 5661478 5664292 ECH