Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0619 ATGGCGGTTCACAACACCAAGCGCGGCGTCGTTGCTCGTTTAACAACCCTAATCAACTCACAGAGGTTTCTCTCCCATGTTCCCGAGGAACCAGTGCAGGGTCAACTATCTCCCAAAACAGGTTCCACTCGCCGAGGTTGTGTTGGCGTCTCAAAATGGACGAGTTTGGATGCAGAGAAGCTTGGTATACCTAGATATATGGTTTCGGACTCATCTTGGTTTGTACTGAAACTTCTTAAGAGCAAAGGATTTAAGTCCTACTTAGTAGGTGGGTGTGTGAGAGATTTACTACTGAATAGAACCCCAAAAGATTTTGATATCATCACTAAAGCAAATCTTGAGCAGGTGAGAATGCTGTTTCGTAGGGCAGGCGGTGCTGAAGTTGTTGGACGACGCTTTCCAGTATGCCTGGTTCATAGAAAAGGTTCAGTAGTAGAGGTAACCTGTTTTGAGACAGTGTCAATCACTTCTGAAGGGACAGAACAATTTTTGAAGTCTGTGTTGCCAAAATGCAGCAATCGAGAAGGCCTATTTCTCTTCAAAAACTCTTTGCACAGGGACTTCACAATTAATAGTTTATTTTATGACCCCTTTGCCAATAAAGTCTACGATTATGCTAATGGAATGGCGGATTTGAGGTCCTTAAAGCTAGAAACTGTGATCCCTGCTCAGCTGTCCTTTGAAGAGGATCCTGGGAGAATTTTGCGTGGCTTCAGAATTGCTGCTCGTCTAGGTTTATCATTATCAAGGGAGACTGAGGCTGCAATCTGGACATGCTCTTCACTAGTTAAGAACTTGAACAAGCAAAAAATAATGGTGGAATTGAACTATATGCTGTCTTATGGAGCTGCTGAACCATCTCTGCACTTACTCTGGAAATTCAAATTGCTTGAATTTTTACTTCCGCTGCATGCAGCATATCTTGACGAACAAGCAACTAAAGAGGATGCTCAGGCGTCCAACATGTTGATGAAATTATTCTTCCATCTGGATAAATTGGTCGGATGTGATAGGCCTTCTGAGTGCAATCTATGGGTTGGATTACTAGCATTTCACCTGGCATTAGTAGATCAACCTCAAGATGCTCTTGTGGTGTCGGTACTTGCTTCTGTTCTATATCATGGGGAGTGGAAAGAAGGGGTTAAATTTGCTAAAAAATGTGCAGACATGTGTGTTAGTTTTGCACCTGAAATAAAGAGCCCCAGTATATACGATTCAGATGAAGAAATTGCAAAAGAAGTCACTAAATTGGCACATTTGGTGATGGGCTCCATATCTGCACTGGTCGAGGATAAAATTCTTACTTATTTCCTGTCTAGATACCCACATTTTCCACGCTCTGGCATGGTATTTATACCAAAGAAAACAGGGAGAAGTGTTTGTGCAATTTTCAAAATGCTGCTGGTCAACGATATCAAACTATATAAGAGTAAAAGAAAAGGTTCTAAGATAAATTACACCATGCTTCGGAGCGGTGATATTTCAGAAGTTGGATTTGTTCTGGGCAAAATTGTTCTTGAAACTATGAACAGTGGAATTGTTGGGGACAGGGATGATTTTGAGGCTCAACAATGTCATCTTAAGACTGAGGCCCCCAAGGAAATTAGCCAACTCTCGGATCTAGTAAACCATCACTTGGTGGCAAAGAAAGGTAAAAGACAGGTTTTATCGACACCAAATCCAGAACGTAGGCAACAACAGATCAAGAAACAGAATTTTTTTGAGAATAGATGTAATGCTAAGCAGAAAATGGGCTCAGAGAACCATGAATTGCTTGAGGAATTTGAGTACAAGAAAACCAATGAAGAGCATCAAAAGCTATACCAGAAGGTTGATCAATCTATGACGACGGATTCGCTGGCTAAAAAGAAAAATAGTCACAGAAAACAGCTGATAAATGATAGGAAGAAGATTGTCAGCCCCGGTGTAAGTTCTTCAGACCAAGGCAGGCATTTAAAGATGGAAGAACACAATACATGTTCGCCATCACAATCTACCGTGTCTAAGATTCATGAGGTGATAGACAATAACTGCAATTTAGATACTACAAATGAGTCCGGCCTAAAGAAGAGGAAAAACCATTTATCAATTGATGAAGTCTTCAACAAGAAAGAAAGACAGCAATCACATAAAAAGAGTGAGCGAAGTTTTCCTTCACTCTCCAGTCTCTTCAAGAAATGA 2181 0.409 MAVHNTKRGVVARLTTLINSQRFLSHVPEEPVQGQLSPKTGSTRRGCVGVSKWTSLDAEKLGIPRYMVSDSSWFVLKLLKSKGFKSYLVGGCVRDLLLNRTPKDFDIITKANLEQVRMLFRRAGGAEVVGRRFPVCLVHRKGSVVEVTCFETVSITSEGTEQFLKSVLPKCSNREGLFLFKNSLHRDFTINSLFYDPFANKVYDYANGMADLRSLKLETVIPAQLSFEEDPGRILRGFRIAARLGLSLSRETEAAIWTCSSLVKNLNKQKIMVELNYMLSYGAAEPSLHLLWKFKLLEFLLPLHAAYLDEQATKEDAQASNMLMKLFFHLDKLVGCDRPSECNLWVGLLAFHLALVDQPQDALVVSVLASVLYHGEWKEGVKFAKKCADMCVSFAPEIKSPSIYDSDEEIAKEVTKLAHLVMGSISALVEDKILTYFLSRYPHFPRSGMVFIPKKTGRSVCAIFKMLLVNDIKLYKSKRKGSKINYTMLRSGDISEVGFVLGKIVLETMNSGIVGDRDDFEAQQCHLKTEAPKEISQLSDLVNHHLVAKKGKRQVLSTPNPERRQQQIKKQNFFENRCNAKQKMGSENHELLEEFEYKKTNEEHQKLYQKVDQSMTTDSLAKKKNSHRKQLINDRKKIVSPGVSSSDQGRHLKMEEHNTCSPSQSTVSKIHEVIDNNCNLDTTNESGLKKRKNHLSIDEVFNKKERQQSHKKSERSFPSLSSLFKK* 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0619 726 SUPERFAMILY Poly A polymerase C-terminal region-like 217 391 - -
Lja2g0619 726 MobiDBLite consensus disorder prediction 699 726 - -
Lja2g0619 726 Gene3D - 219 421 - -
Lja2g0619 726 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 6 725 - -
Lja2g0619 726 SUPERFAMILY Nucleotidyltransferase 61 213 IPR043519 -
Lja2g0619 726 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 6 725 - -
Lja2g0619 726 Pfam Probable RNA and SrmB- binding site of polymerase A 245 307 IPR032828 -
Lja2g0619 726 MobiDBLite consensus disorder prediction 699 713 - -
Lja2g0619 726 Gene3D Beta Polymerase, domain 2 67 218 IPR043519 -
Lja2g0619 726 Pfam Poly A polymerase head domain 87 216 IPR002646 GO:0003723|GO:0006396|GO:0016779
Lja2g0619 726 CDD NT_ClassII-CCAase 77 213 IPR002646 GO:0003723|GO:0006396|GO:0016779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0619 Lja-Chr2 5569507 5578645 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0619 - - ccaj:109801320 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0619 2 5569507 5578645 Lja2g0619 2 5569507 5578645 ECH