Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0616 ATGGCATCAGATGAAGGTGATAATAGTGTTGGAATGACGGAAGTTCATGCGGAAGTTTCAGTTTCGTCTATTCCCGAGGAGGATTTGCGTGATGTGAATCATAAATACAAAGATGGAAGCAATGTAAATCTGATTTTGGAAAATGGCTTCTCTGATGGGAAAGAAGGTCAGGTTGATGATACGCACGATGAGCTTCTACAAATGGCTGTTGACCTTAGATTTCAGAATGAGTTCTTGAAGTCCCAGTTTGAGGGATTTAGCAATGTAAATACTGTACCTAGTGGCTTTAATACAGAGAAAGGAGTCGGTGACAGGGAAGATGGGGAATCCGACATCGTGAAAGAACTCCAGGAAAGGTTAGAATTGTTGAATAAAGAATTTCTAGAAGAAAAACAAACAAGAATTGCGTCCGAAGAGGCTTTGAAGCACCTTCAAGTGGCGTACTCAGAGGCAGAAGCACAAGCCCAAAAACTCTCTGAAAAGCTTGTAGAAGCTCAAACAAAATTGGAGCAAGAAATAAAAGAACGTGAAGAGAAGTACTCTGAACTTGACTCCAAGTTTAATAGGCTTCACAAACGAGCAAAACAACGTATTCAAGATATTCAAAAGGAAAAAGATGATCTTGAGGCACGATTCTCTGAGATCAATGAAACTGCTGAGCGAGCATCATCCCAACAGTCAGCATTGCAACAAGAGTTAGACCGCACAAGGAAACAAGCAAATGAGGCATTGAAAGCCATGGATAGTGACAGGCAACATTTAAGAAGTGAAAACAACAAACTTAGAGATACCGTTGAGGATTTACGGCGTTCATTGCAACCTAAAGAGAGTGCTCTCGAGGCAATGCAACTGTCACTTGCAGAAAAGGAACAGATGTTGGAAGATATGCGAGGGTTGCTTCAGGCTGCTGATGAAAAAAGGCAAGCTGCACTAGCTGAGCTCTCAGCAAAACATCAAAAGAATATAGAAAGTTTAGAGGCTCAACTTAATGATGCATTCTCCGATAGAAGAAAGGCAACTGAATCCATTTCTTCACTGCAGGTTCTAGTTGCAGAGAAAGAATCGAGAATTGCAGAAATGGAGGCAGCATCAACTGGAGAAGCGGCACGACTCAGAGCAGCTGTGGAAAGTGTGAAGGGAGAGCTCTCTCACCTCAAACAAGAGCATGAAAAAGAAAGGGAAAGCTGGCAGAGTGCATCTCAAGCACTTAAGGCAAAACTTGAAATTGCCGAGAGCAACTGCATACGTGCCGAAGTTGAAGTTGCCAAAATAAGAAGTCAATTTGAATCGGAGCTATCTTCACAATCCAGGATCCTCAGTATGAAAGATGCCGAATTGTTGGCTGCGAAGGAAGAGATCAGCAGTCTTGAGAGGGAGTTTTCTTCATACAAAGTTCGTGCACATGCACTTCTTCAAAAGAAGGATGCAGACCTGGCTGCAGCTCAAGACTCTGAACAACTCAAAGCTCTTGAGGAAGCTCTGAAAGAAGCTGAAAATGAAGTCTTATCAATAACAGAAGAAAGGGATAGAGTTCTTCAAGATCTTCAATCTTCTGCCTCTAATCATGAGAGAGAACTTGCAGAAAGAGACACGGCCCTTGAAAATGTCAAGCAACATATAAGGAGCTTAGAAATAAAGCTTGATTCAGCCAGTGCTCAGCACCTAAAAGAGAAAGAGGAATGGGGACTAAGCCTTCAAAATGTAGAAGAAACCTGGAGAATCAGATGCGAGGCGATGAAGGCTGAAAATGAAGCAACTGTTGCAGAAGCTACGCAGAAGGAACTGGAAGAGCTCAAACAGCGATGTAAAAAACTGAAGGAAGAGCATGCTTCATTTCATGATCTTGCTGATAGAATGATTGAGGACAAAGACAGTGAAATATCCAGACTTTTAGATGAAAATAAAAATCTTCGCCAGTCTCTTCAATCAAGGCCAGCACTTGATCAAAATGATTATTATAGCACAGCCTTGCATAAATTGGATTCAACAAACTTAAGTCCCTCAGCTGCAGAGCAACAAATTCTGATTTTGGCTAGACAACAAGCCCAAAGAGAGGAAGAGTTGGCACAGTCACAGCGCCATATTTTAGCACTTCAAGATGAAATTGAGGAGCTTGAACGTGAGAATCGTCTCCACAGCCAACAGGAAGCAGTGTTAAAGGCTGAGCTTCGCGACATGGAAAGAGCAAAGAAAAGGGAAGGTGTAGATATGACGTATTTGAAAAATATTATCTTGAAACTTCTTGAGACAGGTGAAGTGGAGGTATTGCTACCAGTTGTTGGGATGCTGCTTCAGTTTAGTCCAGAAGAGATGCAGAAGTGTCAACAGACATATCGTAACACAGCAGATGTTCCGCCGACTCCAAGTCCAACAAGTGATGCTTCAGGATCTGGCCTATCTCTTTTCTCAAGGTTCCCATTTTCATAA 2427 0.4215 MASDEGDNSVGMTEVHAEVSVSSIPEEDLRDVNHKYKDGSNVNLILENGFSDGKEGQVDDTHDELLQMAVDLRFQNEFLKSQFEGFSNVNTVPSGFNTEKGVGDREDGESDIVKELQERLELLNKEFLEEKQTRIASEEALKHLQVAYSEAEAQAQKLSEKLVEAQTKLEQEIKEREEKYSELDSKFNRLHKRAKQRIQDIQKEKDDLEARFSEINETAERASSQQSALQQELDRTRKQANEALKAMDSDRQHLRSENNKLRDTVEDLRRSLQPKESALEAMQLSLAEKEQMLEDMRGLLQAADEKRQAALAELSAKHQKNIESLEAQLNDAFSDRRKATESISSLQVLVAEKESRIAEMEAASTGEAARLRAAVESVKGELSHLKQEHEKERESWQSASQALKAKLEIAESNCIRAEVEVAKIRSQFESELSSQSRILSMKDAELLAAKEEISSLEREFSSYKVRAHALLQKKDADLAAAQDSEQLKALEEALKEAENEVLSITEERDRVLQDLQSSASNHERELAERDTALENVKQHIRSLEIKLDSASAQHLKEKEEWGLSLQNVEETWRIRCEAMKAENEATVAEATQKELEELKQRCKKLKEEHASFHDLADRMIEDKDSEISRLLDENKNLRQSLQSRPALDQNDYYSTALHKLDSTNLSPSAAEQQILILARQQAQREEELAQSQRHILALQDEIEELERENRLHSQQEAVLKAELRDMERAKKREGVDMTYLKNIILKLLETGEVEVLLPVVGMLLQFSPEEMQKCQQTYRNTADVPPTPSPTSDASGSGLSLFSRFPFS* 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0616 808 Coils Coil 620 640 - -
Lja2g0616 808 PANTHER CROSSOVER SUPPRESSOR ON 3 OF GOWEN 64 775 - -
Lja2g0616 808 ProSiteProfiles GRIP domain profile. 730 777 IPR000237 -
Lja2g0616 808 MobiDBLite consensus disorder prediction 246 265 - -
Lja2g0616 808 Coils Coil 688 732 - -
Lja2g0616 808 Coils Coil 279 363 - -
Lja2g0616 808 Coils Coil 141 271 - -
Lja2g0616 808 Coils Coil 106 133 - -
Lja2g0616 808 Gene3D - 167 338 - -
Lja2g0616 808 Coils Coil 368 427 - -
Lja2g0616 808 Coils Coil 533 560 - -
Lja2g0616 808 MobiDBLite consensus disorder prediction 1 26 - -
Lja2g0616 808 MobiDBLite consensus disorder prediction 776 799 - -
Lja2g0616 808 SMART 1grip 733 777 IPR000237 -
Lja2g0616 808 Coils Coil 439 466 - -
Lja2g0616 808 Coils Coil 473 514 - -
Lja2g0616 808 Coils Coil 578 615 - -
Lja2g0616 808 Pfam GRIP domain 734 773 IPR000237 -
Lja2g0616 808 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 64 775 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0616 - - gmx:100775990 1230.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0616 2 5522712 5532812 Lja2g0616 2 5522712 5532812 ECH