Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0612 ATGGCGACGCGACGCTCCGCACCGCTCCTAAAAAACATATTCTCCCGACTCAACCCGACTCGCTCCGTCACCTACATGCCCCGACCAGGAGACGGCACCCCGCGCGGCGTGACCCTCATCCCTGGCGACGGAATAGGCCCACTGGTCACCGGCGCGGTGGAGCAGGTGATGGAGGCGATGCATGCGCCGGTGTACTTTGAGAAGTACGAAGTGCACGGCGACATGAAGGCGGTGCCCGCGGAGGTGATCGAGTCGATCAAGAAGAACAAGGTGTGCTTGAAGGGCGGCCTCGCCACTCCGATGGGCGGTGGTGTCAGCTCCCTCAATGTGCAGCTCAGGAGGGAGCTTGACCTCTACGCCTCCCTTGTTAACTGCTTCAATGTCCCCGGGTTGCCCACGCGCCATGACAATGTCGACATCGTCGTTATCAGGGAGAATACTGAGGGCGAGTACGCTGGCCTTGAGCACGAGGTCGTTCCCGGCGTCGTCGAGAGTCTTAAGGTAATAACAAAGTTCTGTTCAGAGCGCATCGCTAAATATGCTTTCGAGTTTGCTTATCTAAATAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATAATGAAACTTGCAGATGGTTTATTCCTGGAATCCTGTCGAGAGGTTGCCACTAAGTATCCTGGAATCAAGTATAATGAAATTATTGTGGATAACTGTTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGACGTCATGGTAACCCCCAATCTCTATGGAAATCTGGTGGCAAATACAGCGGCTGGTATTGCTGGAGGCACTGGTGTCATGCCAGGAGGTAATGTTGGGGCAGACCATGCAGTGTTTGAACAAGGTGCTTCAGCAGGAAATGTTGGTAATCAATCGTTAGTGGAACAAAAGAAGGCGAATCCGGTCGCACTCCTTCTTTCGTCAGCCATGATGCTTAGACATCTCCAGTTTCCTGCATTTGCTGACCGATTAGAAAGTGCTGTAGAACAAGTCATTCTAGAGGGCAAGCACCGGACGAAGGACCTTGGAGGGACAAGCACCACGCAAGAGGTTGTTGATGCAGTCATACATGCCTTAGATTGA 1095 0.5242 MATRRSAPLLKNIFSRLNPTRSVTYMPRPGDGTPRGVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEVHGDMKAVPAEVIESIKKNKVCLKGGLATPMGGGVSSLNVQLRRELDLYASLVNCFNVPGLPTRHDNVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEFAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNQSLVEQKKANPVALLLSSAMMLRHLQFPAFADRLESAVEQVILEGKHRTKDLGGTSTTQEVVDAVIHALD* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0612 364 PANTHER NAD-DEPENDENT ISOCITRATE DEHYDROGENASE C,1 19 361 - -
Lja2g0612 364 Gene3D Isopropylmalate Dehydrogenase 25 362 - -
Lja2g0612 364 Pfam Isocitrate/isopropylmalate dehydrogenase 37 359 IPR024084 -
Lja2g0612 364 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 36 363 - -
Lja2g0612 364 SMART Iso_dh_2 36 359 IPR024084 -
Lja2g0612 364 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 19 361 - -
Lja2g0612 364 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 33 362 IPR004434 GO:0006099
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0612 Lja-Chr2 5492149 5495877 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0612 K00030 - gmx:100778831 674.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0612 2 5492149 5495877 Lja2g0612 2 5492149 5495877 ECH