Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0574 ATGATGCTAGACGGAACCGAAGACGAAGAGAAGTTCCTCGCCGCCGGAATCGCCGGCCTCCAACAGAATTCCTTCTACATGCACCGTGCATTGGACTCGAACAATCTCAGAGATGCGTTGAAGTATTCGGCTCAGATGCTTTCCGAGCTCAGAACTTCCAAGCTCTCTCCTCACAAGTACTACGAACTCTATATGCGTGCCTTTGATCAATTAAGGAAGCTCGAGATGTTCTTCGAGGAAGAGGCTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTTGTCCAGCATGCTGGAAACATTTTGCCTCGATTGTATCTCCTCTGTACAGTAGGATCTGTATACATAAAATCCAAGGAAGCTCCTGCTAAGGATGTTCTTAAGGATCTTGTAGAGATGTGTCGTGGCATTCAGCACCCTGTTCGCGGACTCTTTCTCAGAAGTTACCTTTCTCAAGTTAGTAGAGATAAATTGCCAGATATTGGTTCTGAATATGAAGGGGATGCAGATACTGTAGCAGATGCTGTAGAGTTTGTACTCCAAAACTTCACAGAAATGAACAAACTTTGGGTGCGGATGCAACATCAGGGGCCTGCCCGGGAGAAGGAGAAACGGGAAAAGGAAAGGAGCGAGCTGCGCGATCTTGTTGGGAAGAATCTCCATGTTCTCAGTCAGATAGAGGGTGTTGACCTTGAGATGTACAAAGATGTTGTGCTTCCTAGAGTGCTGGAGCAGGTTGTGAATTGCAAAGATGAGTTGGCCCAGTTCTACTTGATGGATTGCATAATCCAAGTCTTCCCTGATGAGTATCACTTGCAAACTCTTGATGTATTGTTGGGTGCTTATCCTCAGCTTCAGGCATCTGTTGACATCAAGACAGTGTTATCCCAGTTAATGGAAAGACTTTCTAATTATGCTGCTTCAAGTGCTGAGGTGTTGCCTGAGTTTTTGCAAGTGGAAGCATTTTCCAAATTAAGCAGTGCCATTGGCAAGGTGATAGAGGCACATCCTGACATGCTCACTTTTGGTGTTGTAACTTTATATTCATCTCTTCTCACTTTCACTCTTCATGTCCACCCTGATCGACTTGATTATGCAGATCAAGTCTTGGGAGCATGTGTGAAAAATCTCTCTGGCAAAGGGAAAATTGAGGACAACAAGGCAACTAAGCAAATTGTTGCTTTATTAAGTGCTCCACTAGAGAAATATAATGATATTATGACTGCCTTGAAGCTTTCAAACTATCCTCGTGTGATGGAATACCTTGATGTTCCAACTAATAAGGTCATGGCAGCTGTTATCATTCAAAGCATTATGAAAAATGGGACACACATATCTACTTCAGACAAGGTTGAAGCATTGTTTGAACTTATAAAGGGGCTTATTAAGGATTCTGATGGGACTCCTAATGACGAGCTGGATGAAGATGATTTCAAAGAAGAGCAGAATTCTGTTTCCCGTCTAATCCAGATGCTTTATAATGACGATCCAGAAGAGATGTTTAAGATTATAGATACTGTGAGGAAGCATGTACTGACTGGAGGATCAAAGCGTCTGCCTTTCACTATTCCACCTCTTGTTTTTTCTTCTTTAAAGTTGGTCAGACAGTTGCAAGGTCAGGATGAAAATCCCTTTGGAGATGATGTAGCAACAACACCGAAGAAAATCTTTCAGCTTTTAAATCAGACCATTGAGAGACTGTCAGGTGTCCTAGCACCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGGCTGCAAATGACTGTGATTTGGAACCAGTAGCATATGAATTTTTCACCCAAGCTTATATTCTATATGAAGAAGAAATTTCGGATTCCAGAGCACAGATCACAGCTATCCATTTAATAATAGGAACTCTTCAAAGGATGCATGTATTTGGTGTGGAGAACAGGGATACTTTAACTCACAAGGCCACAGGGTATTCAGCAAAGCTTTTAAAGAAGCCAGATCAATGCAGAGCCGTGTATGCATGCTCACATCTGTTTTGGGTTGATGATCATGATAACATGAAAGATGGAGAGAGAGTCCTATTGTGTCTCAAGCGGGCTTTAAGAATTGCAAATGCTGCACAACAAATGACAAATGCAGCACGAGGTAGCACCGGATCAGTGATGCTTTTCATTGAGATATTGAACAAGTATCTTTACTTCTTTGAGAAGGGGAACCCACAAATCACACTTGCTGATATCCAGGGCCTAATTGAGTTAATTATGAATGAAATGCAAAGTGACACCACAACTCCAGATCCAGCTGCGGATGCTTTCTTAGCCAGTACCATGCGATTTATACAGTTCCAGAAACAAAAAGGCGGTACAGTAGGTGAGAAGTATGAACCTATCAAGGTTTGA 2373 0.4235 MMLDGTEDEEKFLAAGIAGLQQNSFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKYYELYMRAFDQLRKLEMFFEEEARRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVADAVEFVLQNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLEMYKDVVLPRVLEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLDVLLGAYPQLQASVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFSKLSSAIGKVIEAHPDMLTFGVVTLYSSLLTFTLHVHPDRLDYADQVLGACVKNLSGKGKIEDNKATKQIVALLSAPLEKYNDIMTALKLSNYPRVMEYLDVPTNKVMAAVIIQSIMKNGTHISTSDKVEALFELIKGLIKDSDGTPNDELDEDDFKEEQNSVSRLIQMLYNDDPEEMFKIIDTVRKHVLTGGSKRLPFTIPPLVFSSLKLVRQLQGQDENPFGDDVATTPKKIFQLLNQTIERLSGVLAPELALQLYLQCAEAANDCDLEPVAYEFFTQAYILYEEEISDSRAQITAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDHDNMKDGERVLLCLKRALRIANAAQQMTNAARGSTGSVMLFIEILNKYLYFFEKGNPQITLADIQGLIELIMNEMQSDTTTPDPAADAFLASTMRFIQFQKQKGGTVGEKYEPIKV* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0574 790 Pfam Vacuolar protein sorting-associated protein 35 13 747 IPR005378 GO:0015031|GO:0030906|GO:0042147
Lja2g0574 790 SUPERFAMILY ARM repeat 220 636 IPR016024 -
Lja2g0574 790 PANTHER VACUOLAR SORTING PROTEIN 35 2 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
Lja2g0574 790 PIRSF Retromer_Vps35 2 790 IPR005378 GO:0015031|GO:0030906|GO:0042147
Lja2g0574 790 Gene3D - 465 775 IPR042491 -
Lja2g0574 790 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 2 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0574 Lja-Chr2 5153857 5162581 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0574 K18468 - gmx:100809289 1475.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0574 2 5153857 5162581 Lja2g0574 2 5153857 5162581 ECH