Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0539 ATGGCCGAATCGGGATCTGAGACCCCAACGTCAACCAACGGCGACGCCTCTCCACCGTCACGGAAGGTCGCATTGATCACCGGAATCACCGGCCAAGACGGTTCCTACCTCACCGAGTTCCTCCTCAACAAGGGCTACGAGGTTCACGGCCTGATCCGTCGCTCCTCCAATTTCAACACCCAACGCATCGACCACATCTACGTCGATCCTCACAACGCCCACAAGGCTCGCATGAAGCTCCACTACGCCGATCTCTCCGACGCCTCCTCGCTCCGCCGCTGGCTCGACACCATCCTCCCCGACGAGGTCTACAATCTCGCCGCACAGTCTCATGTTGCTGTGTCCTTCGAGATCCCTGACTACACCGCCGACGTCGTCGCCACCGGCGCGCTCCGCCTCCTCGAGGCCGTCCGATCCCACATCGCCGACTCCGGCCGCTCTCACATCCGATACTACCAGGCCGGATCCTCTGAGATGTTCGGGTCAACCAACCCGCCCCAATCGGAAACCTCCCCGTTTCATCCGAGATCCCCTTACGCCGCCTCCAAGTGCGCCGCGCACTGGTACACCGTCAACTACCGCGAGGCCTACGGGCTCTACGCCTGCAACGGGATCCTCTTCAACCACGAGTCTCCCCGGCGTGGTGAGAATTTCGTGACCCGGAAGATCACCCGGGCCGTGGGTCGGATCAAGATCGGGCTCCAGAGCAAGCTGTTCTTGGGGAACTTGCAGGCTTCGAGGGATTGGGGGTTTGCTGGGGATTACGTGGAGGCGATGTGGTTGATGCTGCAGCAGGAGAAGCCAGATGATTATGTTGTCGCGACGGAGGAGTCGCACACGGTGGAGGAGTTTTTGGAGGTGGCTTTTGGCTCTGCGGGTCTGAATTGGAAGGATCATGTGGTGATTGACAAGAGGTACTTTCGTCCTTCTGAGGTTGATAATCTTCAAGGAGATGCTAGCAAGGCTAAGAAGATTCTTGGGTGGAAGCCTAAGGTTGGGTTTTCTCAGCTGGTGAAGATGATGGTTGATCATGACATTGAAATGGCTAAGAAGGAGAAGGTGCTTGTTGATGCTGGCTACATTGATGCTCAGCAACAACCTTGA 1104 0.5761 MAESGSETPTSTNGDASPPSRKVALITGITGQDGSYLTEFLLNKGYEVHGLIRRSSNFNTQRIDHIYVDPHNAHKARMKLHYADLSDASSLRRWLDTILPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHIADSGRSHIRYYQAGSSEMFGSTNPPQSETSPFHPRSPYAASKCAAHWYTVNYREAYGLYACNGILFNHESPRRGENFVTRKITRAVGRIKIGLQSKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEESHTVEEFLEVAFGSAGLNWKDHVVIDKRYFRPSEVDNLQGDASKAKKILGWKPKVGFSQLVKMMVDHDIEMAKKEKVLVDAGYIDAQQQP* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0539 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 22 347 IPR036291 -
Lja2g0539 367 CDD GDP_MD_SDR_e 23 347 - -
Lja2g0539 367 Hamap GDP-mannose 4,6-dehydratase [gmd]. 22 351 IPR006368 GO:0008446|GO:0019673
Lja2g0539 367 Gene3D - 215 341 - -
Lja2g0539 367 PANTHER GDP-MANNOSE 4,6-DEHYDRATASE 15 362 IPR006368 GO:0008446|GO:0019673
Lja2g0539 367 MobiDBLite consensus disorder prediction 1 21 - -
Lja2g0539 367 TIGRFAM gmd: GDP-mannose 4,6-dehydratase 22 348 IPR006368 GO:0008446|GO:0019673
Lja2g0539 367 PANTHER GDP-MANNOSE 4,6 DEHYDRATASE 1-LIKE 15 362 - -
Lja2g0539 367 Gene3D - 25 331 - -
Lja2g0539 367 Pfam GDP-mannose 4,6 dehydratase 25 341 IPR016040 -
Lja2g0539 367 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0539 Lja-Chr2 4862378 4863928 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0539 23 207 Miscellaneous Gene Families AT4G12250 29.231 2.12e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0539 K01711 - cit:102613014 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0539 2 4862378 4863928 Lja2g0539 2 4862378 4863928 ECH