Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0496 ATGAGATCACCTACAGAGGCTCTTTCTTCCTCCTTTACAAGTATTCGTTCAGCATCATCATGGTTCGAGGTGTATGCTGCGTTCTCCACATTGATGATGCTTCTACGAGCCGTAGTCAACGATCTCATACCCCATCAAGTTCGATCCTTCATCGGGTCAAAGCTCAAATCGTTCTTCTCAGACCGCCAGAACAGCAACCAGGTCTCACTTCAGATCGATAAATACTGGGATGGCCAGAGCAACGAGCTCTTCAAAGCTGCCAAAGAGTTTCTCCCAGCAAGGATCACAGAAACTTACAAATCGCTCAAAGTGGGGAAAATCTCAAAGCACAAGAGTGTGATAGTGGCGGTTGATGGAAAGCAAGATGTGTTGGATGAATTTGAAGGCATCAAGCTTAAATGGAAACTTGTTGAAGCCCTACAACAAGAGGATCGCAGATCAAAGGAGAACGAGGAGACTGCGTTTACCTTAACCTTTGATGAGAAGCACAGGGACAAAGTAATGAAGAAGTACATTCCACATGTTTTAAGCTCCTACAAGGCCATGAAAGCAGAGCAGAGGACTCTGAAGATTCATTCCATGTCAAACAGGCATTGGAAACAGAGTGACTTGACACATCCAGCAACATTTGACACACTTGCTTTGGATCCTGAGCTGAAGAAAACCATTATTGGTGATTTAGAACGGTTCTTGAAGAGGAAAGAGCTCTACAAGAAAGTGGGCAAGCCATGGAAACGTGGCTACCTCTTGTACGGGCCTCCGGGGACCGGAAAATCTAGCCTAATTGCTGCTATGGCAAACTACTTGAAATTTGATGTGTATGATTTGGAGCTGAGTTCTATGTATTCCAACACAGACCTCATGAGGGCCATGAGGGACACATCTAACCAATCCATCATCGTGATTGAAGACATAGACTGCAACAAAGAGGTGCTGGCTCGATCAAATGCAGACAATGATGATTCAGATTCAGACTCTGACATTGAGCTTCCTGTTAAGAAGGTTGTTACGATGACCAAGAGTTTTACTCTTTCGGGTTTGCTTAACTACATGGATGGATTATGGTCAAGCTGTGGAGAAGAGAGGATTATAGTATTTACAACAAATCACAGAGACAAAATAGACCCGGCTTTGCTGAGGCCGGGTCGAATGGACTTGCATATTCACTTGTCCTTCCTTAGAGCCAAGGCATTCCGAATCTTAGCTTTTAATTATCTGGGAATTGAAGGAGATCACCCACTCTTTGAACCAATTGAAGAGCTACTGGAAAAAGTAGAGGTCACCCCAGCTGTGGTGGCAGAGCACTTGCTGAGAAGTGAGGACCCTGACGTTGCTTTGGAAGGACTTGTGAACTTTATCAAGGAAAAGGACGTGGATGGCCTAACTTCAGGTTCATGA 1398 0.4464 MRSPTEALSSSFTSIRSASSWFEVYAAFSTLMMLLRAVVNDLIPHQVRSFIGSKLKSFFSDRQNSNQVSLQIDKYWDGQSNELFKAAKEFLPARITETYKSLKVGKISKHKSVIVAVDGKQDVLDEFEGIKLKWKLVEALQQEDRRSKENEETAFTLTFDEKHRDKVMKKYIPHVLSSYKAMKAEQRTLKIHSMSNRHWKQSDLTHPATFDTLALDPELKKTIIGDLERFLKRKELYKKVGKPWKRGYLLYGPPGTGKSSLIAAMANYLKFDVYDLELSSMYSNTDLMRAMRDTSNQSIIVIEDIDCNKEVLARSNADNDDSDSDSDIELPVKKVVTMTKSFTLSGLLNYMDGLWSSCGEERIIVFTTNHRDKIDPALLRPGRMDLHIHLSFLRAKAFRILAFNYLGIEGDHPLFEPIEELLEKVEVTPAVVAEHLLRSEDPDVALEGLVNFIKEKDVDGLTSGS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0496 465 Pfam ATPase family associated with various cellular activities (AAA) 249 390 IPR003959 GO:0005524|GO:0016887
Lja2g0496 465 Gene3D - 389 460 - -
Lja2g0496 465 CDD AAA 233 391 - -
Lja2g0496 465 Gene3D - 199 388 IPR027417 -
Lja2g0496 465 PANTHER BCS1 AAA-TYPE ATPASE 14 460 - -
Lja2g0496 465 Pfam Domain associated at C-terminal with AAA 43 137 IPR025753 -
Lja2g0496 465 SMART AAA_5 244 394 IPR003593 -
Lja2g0496 465 ProSitePatterns AAA-protein family signature. 362 380 IPR003960 GO:0005524|GO:0016887
Lja2g0496 465 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 14 460 - -
Lja2g0496 465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 439 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0496 Lja-Chr2 4518709 4520409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0496 246 390 Calmodulin-binding Proteins AT3G56690 32.680 1.59e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0496 - K08900 gmx:100787726 629.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0496 2 4518709 4520409 Lja2g0496 2 4518709 4520409 ECH