Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0495 ATGAAATCGCCTCTATCTTCTTTGCTTTCAAGATTTGGATTTGCATCATCATGGTTCGAGTTATATGCTGCCTTCTCCACATTCATGATGCTTCTAAGAACAGTAATCAACGACCTCGTACCCAAACAAGTTCAATCCTACATAGTCTCAAAGCTTTATGGTTTATTCGCCAAAAGCAAACTAAATGATCAAGATCAGTTATCTCTCAAAATTGACCAATATTGGAATGACACTAAAACTCATAATGAGCTTTACTTAGCTGCTCAGAAATATCTGCCCACCCTTATAACCCATACCTACACATCACTCAGAGTTGGCAAACTAGGAAACAAGAGCAACAACCTCCTTGAGTTTGCGGTGGATGGAAGACAAGATGTGGTGGACGAATTTGAAGGCACCGTGTTTACTTGGAGGCTATGTGTTGAACCTCAAAAGATTTCTTCTGATGATGATACTAAGTGGATGTTTTCTTCTGAGTTTTCCTCTGAGGACGAGAAGAAGCGTGCGTGGGAATTAACATTCAATAAGAAGTACAGAGAGAAAGCAATAGATAAGTACATACCGCATGTGCTTAAAACTTATGAGGCTATGAAAATTGAAGAAAGGGATGTTAAGATCTATTCCTGGAATGGCGGGGGTTGGAAACCAAGTGTGTTATCGCATCCTTCCACATTTGAGACACTTGCCTTGGACCCTGAGATGAAGCAAACCATTATTCATGATGTAGAACGATTCTTGAAGAGGAAGGAATTTTACAAAAAAGTGGGAAAACCGTGGAAACGCGGTTACCTTTTGTATGGCCCTCCTGGAACTGGAAAATCTAGTCTCATTGCGGCTCTGGCTAATTATTTGAAATTCGATGTGTACGATATACAACTTACCTCGATTCAATCTGACTCGACTCTTAAGAGATTGGTGTGTGACACACCAAAACGTTCCATTGTAGTGATTGAAGACATAGACTGCAACAAAGAGGTACATGCTCGTTCTATGGATCAAGACCTTCTTGAAACACCAAAGCAGAGGTTTAGTTTGTCGGGCATGCTTAATTACATGGACGGGTTGTGGTCAGGCAGTGGAGATGAGAAAATTATGATATTTACAACAAACCACAAAGACAGAATAGATCCAGCACTGCTACGACCTGGTCGTATGGACATGCACATTAATCTTTCCTTCCTTAAAGCCAAGGCATTTAGAATCCTAGCTTCTAATTATCTTGACATTGAAGACCATCATCCACTCTTTGAACAAATTGAATTTCTATTGGAGGAGAAAATAGAGGTCACCCCTGCAGTAGTGGCAGAGCAGTTAATAAGACATGAAGATCCTGATATTGCTTTAGATGAACTGCTGAAATTTCTCAAAGAGATGGAAAAGCAAAGAGAACCAAAAAAGTCAGAAGACATTCATGATTTCTTAGGATGA 1428 0.3992 MKSPLSSLLSRFGFASSWFELYAAFSTFMMLLRTVINDLVPKQVQSYIVSKLYGLFAKSKLNDQDQLSLKIDQYWNDTKTHNELYLAAQKYLPTLITHTYTSLRVGKLGNKSNNLLEFAVDGRQDVVDEFEGTVFTWRLCVEPQKISSDDDTKWMFSSEFSSEDEKKRAWELTFNKKYREKAIDKYIPHVLKTYEAMKIEERDVKIYSWNGGGWKPSVLSHPSTFETLALDPEMKQTIIHDVERFLKRKEFYKKVGKPWKRGYLLYGPPGTGKSSLIAALANYLKFDVYDIQLTSIQSDSTLKRLVCDTPKRSIVVIEDIDCNKEVHARSMDQDLLETPKQRFSLSGMLNYMDGLWSGSGDEKIMIFTTNHKDRIDPALLRPGRMDMHINLSFLKAKAFRILASNYLDIEDHHPLFEQIEFLLEEKIEVTPAVVAEQLIRHEDPDIALDELLKFLKEMEKQREPKKSEDIHDFLG* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0495 475 CDD AAA 260 392 - -
Lja2g0495 475 Pfam Domain associated at C-terminal with AAA 40 140 IPR025753 -
Lja2g0495 475 Gene3D - 220 388 IPR027417 -
Lja2g0495 475 PANTHER NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN, PUTATIVE-RELATED 13 463 - -
Lja2g0495 475 Gene3D - 389 459 - -
Lja2g0495 475 PANTHER BCS1 AAA-TYPE ATPASE 13 463 - -
Lja2g0495 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 462 IPR027417 -
Lja2g0495 475 SMART AAA_5 259 395 IPR003593 -
Lja2g0495 475 Pfam ATPase family associated with various cellular activities (AAA) 264 391 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0495 Lja-Chr2 4502336 4504027 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0495 225 391 Miscellaneous Gene Families AT2G29080 30.556 4.44e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0495 - K08900 gmx:100789094 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0495 2 4502336 4504027 Lja2g0495 2 4502336 4504027 ECH