Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0493 ATGTTTTCTCCAAGAGAAATGCCTTCCCCTTCCTCCATCTTCTCCGCCTACGCCTCCATGACCGCCTCCATCATGCTCGTCCGTTCCATGGCCAACGACCTCATCCCTCAACCAATCCGCGGCTACCTCACCAACGCCATCCGCCGCCTCATCATCAAGCCTCGCTCCCCTACTCTCACCCTCATCATCGAAGAATCCTCCGGCATCGCCCGCAACCAAGTCTACGACGCCGCAGAAGCTTACCTCTCCACCAGGGTCCGCCCTGAAAACGAACGCCTCAAAATCAGCAAGACCCCAAAGGAGAAGAAGCTCACCATCCGCCTAGAGAAAGATGAGAAGGTTGAAGATATCTACAACGGTGCTTCTCTTATCTGGAAATTCATCTGCGCAGAGACAGAGAAAAACAGCACCTTGAGCAACAACCACGACATTCACAACAACAGTGTTTCCTTGAGATCGGAAAAACGCTATTTCGAGCTGAGTTTTCTCAAGGAGCATAAGGAGATGGTGCTGGAGTGTTACCTTCCCTTCATTCTTGACAGAGCTAAAGAGATGAAGGATGAGGACCGCGTGTTGAAGATCCATACACTGAACGCTTCTTACTGTTACAATGTAATCAAGTGGGACTCCATAAACCTTGAACACCCGTCAACTTTTGAGACTTTGGCGATGGAGCCGGAGGCGAAGAAGGCGGTGATGGAGGACCTGAACAGGTTTGTGAAGAGAAAGGAGTTTTACAAGAAGGTGGGGAGGGCGTGGAAGCGCGGTTACTTGCTATATGGGCCTCCGGGAACTGGGAAATCGAGCTTGATTGCTGCAATGGCGAACTATTTGAAGTTTGATATCTTTGACCTGCAGCTTGGGAATATAGTGAGGGATTCGGATCTAAGGAAGTTGCTTCTAGCTACCGCGAATAGATCCATTTTGGTGATTGAGGATATTGATTGCAGCGTGGATCTGACGGAACGTCGCAATGGAGGAGATGGACAAACTGATGTACAGGCTCATCGTGAATCTGATGGATGGATGCAACTGACTCTGTCCGGATTACTGAACTTCATAGATGGGCTCTGGTCAAGCTGCGGAGACGAGAGAATCATTGTCTTCACCACCAACCACAAAGAAAGACTAGACCCAGCTCTGTTGAGGCCAGGAAGAATGGACGTGCACATTCACATGTCCTATTGCTCCTACCAAGGCTTCAAGCTCTTGGCCTCAAATTACTTGAGCAATATTTCCCCTGATCACCAGAGCCTCTTTGGTGAAATTGAAGGACTCATAGAGGACATTCAGATAACCCCTGCACAGGTGGCAGAGGAGTTGATGAAGAGTGAAGACGCTGATGCCACACTTGAAGGATTCGTGAAGCTGCTTAAGAGGAAGAAGATGGAAGGTGATGTTTGTGAGAATTTTAGTGCTCCAGATAAGGCAGAAGAACCATCTAAAAGGCGCAAGGTTGCTGCAGGTTGCAAGAAAAAACGAGGGGGTGGTGGTGTTGGGATCAACGAGAACAATGGTACTGTTGCTGTTACCCAAAGAAGGACAAGAAGAGGGTGTAGTTTATGA 1566 0.4885 MFSPREMPSPSSIFSAYASMTASIMLVRSMANDLIPQPIRGYLTNAIRRLIIKPRSPTLTLIIEESSGIARNQVYDAAEAYLSTRVRPENERLKISKTPKEKKLTIRLEKDEKVEDIYNGASLIWKFICAETEKNSTLSNNHDIHNNSVSLRSEKRYFELSFLKEHKEMVLECYLPFILDRAKEMKDEDRVLKIHTLNASYCYNVIKWDSINLEHPSTFETLAMEPEAKKAVMEDLNRFVKRKEFYKKVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIFDLQLGNIVRDSDLRKLLLATANRSILVIEDIDCSVDLTERRNGGDGQTDVQAHRESDGWMQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKERLDPALLRPGRMDVHIHMSYCSYQGFKLLASNYLSNISPDHQSLFGEIEGLIEDIQITPAQVAEELMKSEDADATLEGFVKLLKRKKMEGDVCENFSAPDKAEEPSKRRKVAAGCKKKRGGGGVGINENNGTVAVTQRRTRRGCSL* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0493 521 MobiDBLite consensus disorder prediction 471 485 - -
Lja2g0493 521 Pfam ATPase family associated with various cellular activities (AAA) 258 394 IPR003959 GO:0005524|GO:0016887
Lja2g0493 521 Gene3D - 392 465 - -
Lja2g0493 521 ProSitePatterns AAA-protein family signature. 365 383 IPR003960 GO:0005524|GO:0016887
Lja2g0493 521 SMART AAA_5 253 397 IPR003593 -
Lja2g0493 521 PANTHER BNAA10G17020D PROTEIN 6 476 - -
Lja2g0493 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 446 IPR027417 -
Lja2g0493 521 MobiDBLite consensus disorder prediction 471 494 - -
Lja2g0493 521 Pfam Domain associated at C-terminal with AAA 35 128 IPR025753 -
Lja2g0493 521 Gene3D - 206 391 IPR027417 -
Lja2g0493 521 PANTHER BCS1 AAA-TYPE ATPASE 6 476 - -
Lja2g0493 521 CDD AAA 254 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0493 Lja-Chr2 4479393 4484311 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0493 219 417 Miscellaneous Gene Families AT2G29080 32.057 5.38e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0493 - - lja:Lj2g3v1729190.1 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0493 2 4479393 4484311 Lja2g0493 2 4479393 4484311 ECH