Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0487 ATGAAGCATTTTGCTTTACTGTTTCTTTTGTCTATTTTGGTCCATCATGTCAGTGTGAAAGCTAAGGATGATTTTGTCAGAACCAGAGGCATCCACTTCATGTTGAATGGAAGCCCTTACTATGCAAATGGCTTCAATGCTTACTGGTTAATGTACACAGCTTCTGACCCATCTCAGAGATACAAAGTTTCAGCTGCTTTCCGTGAAGCAACAAGTCATGGCCTCACTGTTGCTAGAACTTGGGCTTTCAGTGATGGTGGTTATAGACCTCTACAGTATGCTCCTGGCTTCTATAATGAGCAAATGTTTAAGGGGTTAGACTTTGTTATATCTGAGGCCAGAAGGCATGGGATTAAGCTCATATTGAGCTTGGTGAACAACTATGATAGCTTTGGAGGGAAGAAGCAGTATGTGAACTGGGCTAGAAGTAAAGGGCAGTACCTTACATCAGATGATGATTTCTTCAGGAATCCTGTTGTCAAGGGTTTCTACATAAACCATGTCAAGACTGTGCTTAACAGATACAACAGTTTCACTGGAATTCATTACAAAGATGATCCAACTATCATGGCCTGGGAGCTTATGAATGAACCTAGATGCACATCAGATTCTTCAGGGAGAACTATTCAGGCTTGGATCACGGAAATGGCTTCTTTTGTGAAGTCCATAGACAGGAAACATTTATTGGAGGCAGGGCTTGAAGGGTTTTATGGACAATCAACACCACAAAGAAAGCAAATGAATCCTGGTTTTGATATAGGGACAGACTTCATTGCAAACAACCGAGTCCCTGGCATTGATTTTGCAACTGTTCACTGCTATCCCGACCAATGGGTATCCAGCTCAAATGATCAAAATCAACTTTCATTCTTGAACAACTGGCTTAGCGCTCACTTCCTAGACGCACAATATATGCTCCGGAAGCCAATTCTGGTAGCAGAATTTGGGAAGTCATTCAAGGATTCAGGTTACAGCAACTACCAGAGGGATGAGCTCTTCAATTCTGTGTACTACAAGATATACTTCTCTGCCAAAAGAGGCGGCGCAGCAGGGGGAGCTATGTTCTGGCAGCTTCTGACGGAAGGCATGGAGTCTTTCGACGATGGGTATGGAATAAAGCTCGGTGAGAGTTCCTCTACTGCGAACGTGATTGCTCAGCAGTCTCACAAGCTGTACATGATTCGAAAGATCTATGGGAGGCTCGCCAATGTGCGGCGGTGGAAGAGGGCCAGAAGCAGAGGATTTTCGCGCTCTGGAGGAAACAGAGGTGGGCAAATTGGGAACTGA 1287 0.4429 MKHFALLFLLSILVHHVSVKAKDDFVRTRGIHFMLNGSPYYANGFNAYWLMYTASDPSQRYKVSAAFREATSHGLTVARTWAFSDGGYRPLQYAPGFYNEQMFKGLDFVISEARRHGIKLILSLVNNYDSFGGKKQYVNWARSKGQYLTSDDDFFRNPVVKGFYINHVKTVLNRYNSFTGIHYKDDPTIMAWELMNEPRCTSDSSGRTIQAWITEMASFVKSIDRKHLLEAGLEGFYGQSTPQRKQMNPGFDIGTDFIANNRVPGIDFATVHCYPDQWVSSSNDQNQLSFLNNWLSAHFLDAQYMLRKPILVAEFGKSFKDSGYSNYQRDELFNSVYYKIYFSAKRGGAAGGAMFWQLLTEGMESFDDGYGIKLGESSSTANVIAQQSHKLYMIRKIYGRLANVRRWKRARSRGFSRSGGNRGGQIGN* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0487 428 PANTHER MANNAN ENDO-1,4-BETA-MANNOSIDASE-LIKE PROTEIN 1 412 - -
Lja2g0487 428 Gene3D Glycosidases 21 395 - -
Lja2g0487 428 SUPERFAMILY (Trans)glycosidases 25 384 IPR017853 -
Lja2g0487 428 Pfam Cellulase (glycosyl hydrolase family 5) 59 326 IPR001547 GO:0004553|GO:0071704
Lja2g0487 428 PANTHER - 1 412 IPR045053 GO:0004553
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0487 Lja-Chr2 4417083 4419748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0487 1 428 Glycoside Hydrolase AT5G66460 65.668 0.0 591
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0487 K19355 - gmx:100792073 749.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0487 2 4417083 4419748 Lja2g0487 2 4417083 4419748 ECH