Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0465 ATGACCGCCGCTAGGTTAACCTCATGCGTGGTCGCCACCACAGCTGCGGCGGCGGCTTCCTATTCCGCGCGCTCCGATCGTGCATACGCCGACTCTCGCTTTCGCTTCCCCTTTTTCTCATCTTCACCGCCTTCAAATTCCCCTTCGTCGTCTGACCAGGCTTCTGACACCAAATCCGAAACCCCGCCACCCGATGAATCCAGCAAGTCGGGTTTCGATTCTCCGGAATTGTTAGAAAGAGCTGCTCGAGCTCTCCGTAAAATCAATAATTCTCGGTTGGCCAAAGAGGTGTTTGCTATAATGCGTGCACAGGAAAAAACTCGCCTCGCTGAATTAGATGCTGAAAAAGTTCACTATGAACTCATTCAGGCTCATAATGATATTGAAAGGCAGCGGAAAATTGTTGAAGAGCAACGAAATCTATTACAAGACCAAGCCCAGAGAGAGGCCCAGGCGCGCCGACAGGAAGACGATCTGGCAAGGAAAAGAATGCAGGCAGATCATGAAGTTCAAAGGCAAAATAATGTTGAATTGGTCAAGAGGCAAGAGGAGTCTGCTGTAAGAAAGGAGAGGTCAAGACAGGCTACAGAAGAACAGATCCAATCTCAGCAACGTCAGACTGAGAAAGAGAGAGCTGAAATGGAAAGAGAAACCATCAGAGTTAAGGCAATGGCAGAGGCTGAAGGTCGAGCCCATGAAGCAAAATTGACTGAGGATCAGAAAAGGAGAATGCTTGTTGATCGAATTCAAGGTGAAAGAGATAAATGGCTTGCTGCAATTAACACAACTTTTAGTCATATCGAAGGTGGTCTAAGGGTCTTATTGACTGATAGGGACAGATTGCTTATGACTGTTGGAGGAGTCACTGCATTAGCTGCAGGTGTATATACAACTAGAGAAGGTGCAAAAGTTACATGGGGCTATATTAATCGGATTTTGGGGCAGCCATCATTGATCCGGGAATCATCCATGGCAAAGTTTCCAGGGGCAAGGATCGTTTCTCAAGCCAAGAATAAAGTTTATAGTACTTTGGGCGGGGCAGAAAAGCCTATTGGGAGTCAAAATGGTCTTGGAAATGTGATCCTCCATCCATCGTTGCTAAAAAGAATACAGCATCTTGCACGGGCAACATCAAACACTAAGGCCCATCAGGCACCATTTCGTAATATGCTTTTTTATGGGCCTCCCGGGACTGGTAAAACCATGGTTGCAAGGGAAATAGCTAGAAGATCGGGTTTGGATTATGCCATGATGACCGGAGGAGATGTTGCGCCTCTTGGCGCTCAGGCAGTCACCAAAATTCATGAGATATTTGATTGGGCCAAGAAATCAAGAAAAGGCCTGTTGCTTTTTATTGATGAGGCAGATGCTTTCCTTTGCGAGCGAAATAGCACATATATGAGCGAAGCTCAGCGAAGTGCTCTAAACGCATTGCTCTTCAGAACTGGTGATCAGTCTAGAGACATAGTACTTGTTCTTGCCACAAACAGACCAGGAGATCTTGACAGCGCAGTTACTGATCGCATTGATGAAGTGATTGAATTCCCACTTCCGGGAGAAGAGGAGCGTCTAAAATTATTGAAGCTCTATCTGAACAAGTATCTATGTCATGACAACAATGGCTCCAAGGGAGGCTTGTTGCTGAAGAAGCAACCCAAACAGATTACTATAAAAGATTTATCTGAAGATGTGCTCAAAGAGGCTGCCAAGAAAACCGAGGGCTTTTCTGGCCGTGAGATAGCCAAACTTATGGCCAGTGTCCAAGCTGCTGTTTATGGTCGCCCAGATTGCGTCTTGGATTCCCAGTTGCTTAAAGAAATTGTGGATTACAAGGTGGTGGAACATCATCAACGGTTACAACTTGCATCTGAAGGCGGCATTTTCAGCTTTTAA 1893 0.4596 MTAARLTSCVVATTAAAAASYSARSDRAYADSRFRFPFFSSSPPSNSPSSSDQASDTKSETPPPDESSKSGFDSPELLERAARALRKINNSRLAKEVFAIMRAQEKTRLAELDAEKVHYELIQAHNDIERQRKIVEEQRNLLQDQAQREAQARRQEDDLARKRMQADHEVQRQNNVELVKRQEESAVRKERSRQATEEQIQSQQRQTEKERAEMERETIRVKAMAEAEGRAHEAKLTEDQKRRMLVDRIQGERDKWLAAINTTFSHIEGGLRVLLTDRDRLLMTVGGVTALAAGVYTTREGAKVTWGYINRILGQPSLIRESSMAKFPGARIVSQAKNKVYSTLGGAEKPIGSQNGLGNVILHPSLLKRIQHLARATSNTKAHQAPFRNMLFYGPPGTGKTMVAREIARRSGLDYAMMTGGDVAPLGAQAVTKIHEIFDWAKKSRKGLLLFIDEADAFLCERNSTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVTDRIDEVIEFPLPGEEERLKLLKLYLNKYLCHDNNGSKGGLLLKKQPKQITIKDLSEDVLKEAAKKTEGFSGREIAKLMASVQAAVYGRPDCVLDSQLLKEIVDYKVVEHHQRLQLASEGGIFSF* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0465 630 MobiDBLite consensus disorder prediction 145 213 - -
Lja2g0465 630 CDD AAA 371 517 - -
Lja2g0465 630 MobiDBLite consensus disorder prediction 145 196 - -
Lja2g0465 630 PANTHER AAA-TYPE ATPASE FAMILY PROTEIN 1 626 - -
Lja2g0465 630 SMART AAA_5 386 519 IPR003593 -
Lja2g0465 630 Pfam ATPase family AAA domain-containing protein 3, N-terminal 55 320 IPR021911 -
Lja2g0465 630 Pfam ATPase family associated with various cellular activities (AAA) 390 517 IPR003959 GO:0005524|GO:0016887
Lja2g0465 630 Gene3D - 332 534 IPR027417 -
Lja2g0465 630 MobiDBLite consensus disorder prediction 39 68 - -
Lja2g0465 630 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 613 IPR027417 -
Lja2g0465 630 MobiDBLite consensus disorder prediction 39 75 - -
Lja2g0465 630 PANTHER PUTATIVE ATP-ASE 1 626 IPR039188 GO:0005739|GO:0007005
Lja2g0465 630 Coils Coil 125 155 - -
Lja2g0465 630 Coils Coil 179 220 - -
Lja2g0465 630 ProSitePatterns AAA-protein family signature. 489 508 IPR003960 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0465 Lja-Chr2 4246599 4252967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0465 388 593 Miscellaneous Gene Families AT5G53170 30.556 1.79e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0465 K17681 - gmx:100777755 933.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0465 2 4246599 4252967 Lja2g0465 2 4246599 4252967 ECH