Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0456 ATGGTGCACAGCGCTTACGATTCTTCGGAACTGGTCCCCAATTTCCCCGGGAAAATTGAATCCGTCGTAACATACGACTCCAAGCTTCTCGTCGGTTGCTCCGATGGATCTCTCCGAATATACTCGCCGGAACCCGATTCACCGGATCGGGTCAAGCCACCGTACGTGCTGGAGAAGAATCTCACCGGCTTCGCCAAGAAGCCTATTGTTTCACTCGAGGTTTTGGAATCCAGAGAGCTCCTCTTATCGCTCTCGGAATCCATCGCGTTTCACAGACTCCCTTCTCTGGAAACCATCGCAGTCATCACCAAGGCGAAGGGTGCAAACGTCTTCTGCTGGGACCACCGGCGTGGCTTCCTCTGCTTCGCTAGACAGAAACGTGTCTCCATTTTCAGACACGACGGTGGTAGAGGATTTGTGGAGGTGAAAGAGTTTGGTGTACCTGACATGGTGAAGTCCATGTGCTGGTGTGGGGAGAATATCTGTTTAGGGATTAGGAGAGAGTATTTGATTTTGAATGCTTCGAATGGCGCTTTGTCGGAGGTTTTTACTTCCGGGAGACTTGCGCCGCCTTTGGTAGTGTCTCTTCCCTCTGGAGAGCTTCTTCTTGGAAAGGAGAACATTGGGGTCTTTGTGGACCAAAATGGGAAACTTATTCCTGAAGGTAGGATTTGTTGGTCGGAGGCCCCGTTAGAAGTTGTGATTCAGAAGCCGTATGCTATAGCTCTGCTGCCCAGATTTGTGGAGATTCGATCGCTCCGGGATCCTTATCCACTGATACAAACTGTCGTTCTTCGTAATGTTCGCCATATTTGCCAAAGCAATAATTCTATGATACTTGCTTTGGATAATTCTATTCATGGTCTTGTCCCTGTTCCTCTTGGAGCCCAGATTGTCCAATTAACAGCTTCTGGCAACTTTGAAGAGGCCTTGTCATTGTGCAAGCTCCTTCCTCCTGAAGATTCAAGTCTACGTGCTGCAAAGGAGGGATCAATCCATATAAGATATGCCCACTATCTTTTTGAAAATGGGAGCTATGAGGAGGCTATGGAACAGTTTCTGGCATCTCAAGTTGATATAACCTATGTGCTTTCTCTGTATCCATCCATTATCCTTCCAAAGACATCTGTAGTTCATGAGACGGAGAAGCTGGACATTGACGGGGATGTTTCCTATCTATCTAGAGGTTCTTCAGGTCTGTCGGACGATATGGAACCCTCATCAACGTCTCATATGTCAGAATCTGATGAGAATGCAGCACTTGAGTCCAAAAAAGTGAACCATAATACGCTTATGGCTCTCATAAAATATTTACAGAAGAAGAGATATAGTTTCGTTGAGAAGGCCACTGCAGAGGGAACTGAAGAAGTTGTTTTGGATGCTGTTGGGGATAACTTCGCATCCTACAATAGGTTTAAGAAAACTAACAAGGGGCGTAGTAGTATCCCTGTTAGTTCAGGAGCTCGAGAGATGGCTTCAATATTGGATACTGCTCTACTCCAAGCGTTGCTTCTGACTGGACAATCTTCAGTGGCTTTAGAATTACTGAGAGGTGTTAACTACTGTGATTTGAAAATATGCGAAGAAATACTCCGCAAAGGCAACCATAATGTTGCTCTATTAGAACTTTTCAAGTGCAACTCATTGCACCGGGAAGCTCTTGAACTTCTTCACAAATTGGTTGAAGAGTCAAGATCTAGCCAGTCTGAAATTACACAAAGGTTCAAGCCTGAGGACATTGTTGAGTATCTCAAGCCACTATGTGGGACAGACCCGATGCTTGTTCTAGAGTTCTCGATGCTTGTTCTTGAAAGCTGTCCATCCCAAACTATTGAGCTCTTTCTGTCCGGCAATATTCCAGCAGATATGGTTAATTCATATTTGAAGCAGCATTCTCCAAACATGCAAGCTACATACTTGGAGCTCATGCTTGCTATGAATGAGAATGCCATATCCGGCAATTTGCAAAATGAAATGGTAAATATCTATCTTTCCGAAGTACTTGATTGGCATGCTGATTTAAGTGCTCAACAAAATTGGGATGAGAAAGCATATTCCCCAACAAGGAAAAAATTATTGTCTGCTTTAGAGGGTATATCAGGATACAATCCAGAGGCTCTGCTGAAACGTCTTCCACGAGATGCTCTATATGAAGAGCGTGCAACATTGTTGGGAAAAATGAACCAGCACGAACTGGCATTATCTTTATATGTTCATAAGCTTCATGTTCCAGAACTAGCGTTGTCTTATTGTGATCGGGTCTATGAGTCTACACACCAGCCATCTGTAAAATCTTCCAGCAACATCTACCTATTGCTTCTGCAAATCTATTTGAATCCTCGAAGGACCACGGCAAGATTTGAAGAGAGAATTACAAATTTATTATCCCCACAGAATACAAATCTTCCGAAAGTTAGTTCAGCAACATCAGCTAAAAGTAAGGGAGGCCGAGGAACAAAGAAAGTTGCTGAGATAGAGGGTGCAGAGGACACAAAAGTTAGTTTGAGCAGCACTGACAGTAGCAGGAGTGATGGTGATGCGGATGAATTTGTTGAGGGTGGCTCTACTATCATGTTTACTGAGGTCCTTGATTTGTTGAGCCGCAGGTGGGATAGAATAAATGGAGCTCAAGCCCTTAAACTTTTGCCAAAAGAGACTAAATTACAGGACTTGCTTTCATTTATTGAACCCCTTCTGAGAAAATCTAGTGAAATGTACCGTAATTGTTCGGTGATCAAGAGCTTGAGACACAGCGAGAACCTTCAGGTGAAAGATGAACTCTATAATCAGAGGAAAGCTGTTGTGAAGATAACCGGTGATAGCATTTGTTCTCTGTGCCATAAGAAATTAGGGACTAGTGTTTTTGCAGTCTACCCCAATGGGAGCACTCTCGTGCACTTCGTCTGTTTCAGAGATTCTCAAAATATGAAAGCAGTGTCCAAAGGGTCTCAATCGAGGAAGCGGTCATGA 2970 0.4404 MVHSAYDSSELVPNFPGKIESVVTYDSKLLVGCSDGSLRIYSPEPDSPDRVKPPYVLEKNLTGFAKKPIVSLEVLESRELLLSLSESIAFHRLPSLETIAVITKAKGANVFCWDHRRGFLCFARQKRVSIFRHDGGRGFVEVKEFGVPDMVKSMCWCGENICLGIRREYLILNASNGALSEVFTSGRLAPPLVVSLPSGELLLGKENIGVFVDQNGKLIPEGRICWSEAPLEVVIQKPYAIALLPRFVEIRSLRDPYPLIQTVVLRNVRHICQSNNSMILALDNSIHGLVPVPLGAQIVQLTASGNFEEALSLCKLLPPEDSSLRAAKEGSIHIRYAHYLFENGSYEEAMEQFLASQVDITYVLSLYPSIILPKTSVVHETEKLDIDGDVSYLSRGSSGLSDDMEPSSTSHMSESDENAALESKKVNHNTLMALIKYLQKKRYSFVEKATAEGTEEVVLDAVGDNFASYNRFKKTNKGRSSIPVSSGAREMASILDTALLQALLLTGQSSVALELLRGVNYCDLKICEEILRKGNHNVALLELFKCNSLHREALELLHKLVEESRSSQSEITQRFKPEDIVEYLKPLCGTDPMLVLEFSMLVLESCPSQTIELFLSGNIPADMVNSYLKQHSPNMQATYLELMLAMNENAISGNLQNEMVNIYLSEVLDWHADLSAQQNWDEKAYSPTRKKLLSALEGISGYNPEALLKRLPRDALYEERATLLGKMNQHELALSLYVHKLHVPELALSYCDRVYESTHQPSVKSSSNIYLLLLQIYLNPRRTTARFEERITNLLSPQNTNLPKVSSATSAKSKGGRGTKKVAEIEGAEDTKVSLSSTDSSRSDGDADEFVEGGSTIMFTEVLDLLSRRWDRINGAQALKLLPKETKLQDLLSFIEPLLRKSSEMYRNCSVIKSLRHSENLQVKDELYNQRKAVVKITGDSICSLCHKKLGTSVFAVYPNGSTLVHFVCFRDSQNMKAVSKGSQSRKRS* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0456 989 ProSiteProfiles Citron homology (CNH) domain profile. 16 278 IPR001180 -
Lja2g0456 989 Pfam Vacuolar sorting protein 39 domain 1 495 603 IPR019452 -
Lja2g0456 989 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 598 785 IPR000547 GO:0006886|GO:0016192
Lja2g0456 989 MobiDBLite consensus disorder prediction 798 847 - -
Lja2g0456 989 Pfam Region in Clathrin and VPS 623 753 IPR000547 GO:0006886|GO:0016192
Lja2g0456 989 PANTHER VACUOLAR SORTING PROTEIN 39 1 988 - -
Lja2g0456 989 Pfam Vacuolar sorting protein 39 domain 2 863 971 IPR019453 -
Lja2g0456 989 PANTHER CNH DOMAIN CONTAINING 1 988 IPR032914 GO:0016192
Lja2g0456 989 Pfam CNH domain 26 272 IPR001180 -
Lja2g0456 989 MobiDBLite consensus disorder prediction 798 814 - -
Lja2g0456 989 MobiDBLite consensus disorder prediction 397 416 - -
Lja2g0456 989 SUPERFAMILY WD40 repeat-like 15 202 IPR036322 GO:0005515
Lja2g0456 989 MobiDBLite consensus disorder prediction 397 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0456 Lja-Chr2 4176254 4183124 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0456 K20183 - gmx:100805342 1657.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0456 2 4176254 4183124 Lja2g0456 2 4176254 4183124 ECH