Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0445 ATGGAAAAGGAGAAAATGAAGTGTCCGTACTGCTCGGCGGCGGCTGGCCGTTGCGCCACCACGAGCTCCGGCAGGTCAATAACGGAGTGCACGTCTTGCGGCCGGGTCATGGAAGAGCGACAATCGCATCCCCACCACGTCTTCCACCTCCGCGCCCAAGACAACCCTCTGTGCCTCGCCACCTCCGATCTCCCTCTCCCGACTCTCCACCACCAAAACGACGCCGGCGACGAGGAGGACCCTTTCGAACCCACGGGCTTCCTCACCGCGTTCTCCACCTGGTCCCTGGAACCCAGCCCGCTTTACCTTCAGTCCTCCATCGCGTTCTCCGGCCACCTCGCTGAACTCGAGCGCACTCTCGAATCGTCTTCTTCTTCTTCAGCTACAGTCGTGGTTGATAACTTGAGGGCGTACATGCAGATTATCGATGTTGCCTCCATTCTGGGCTTGGATTGCGATATCTCCGATCACGCTTTTCAATTGTTCAGGGATTGTTGCTCCGCCACTTGCTTGAGAAACCGCAGTGTGGAGGCTCTTGCCACCGCCGCTCTTGTTCATGCCATTCGAGAGGCTCAAGAGCCCAGAACCCTCCAGGAAATTTCAATTGCGGCCAATGTGCCGCAGAAGGAAATAGGGAAATACATCAAGATACTTGGAGAAGCTTTGCAGCTAAGTCAACCTATTAACAGCAACTCCATTTCAGTTCATATGCCAAGATTTTGCACACTTCTCCAGCTCAATAAATCTGCTCAGGAACTGGCTACTCACATAGGAGAGGTTGTGATCAACAAATGCTTCTGCACTCGTAGGAATCCAATTAGCATCTCAGCTGCTGCTATATATTTAGCTTGCCAACTTGAAGATAAACGCAAAACACAAGCTGAAATTTGCAAGGTAACTGGACTTACTGAAGTCACCCTCCGTAAAGTGTACAAGGAACTATTGGAGAATTGGGATGATTTACTTCCCTCTAATTACACCCCAGCTGTTCCTCCTGAGAGGGCATTCCCCACGACCGTAATTGCCTCTGCTCGTTCTTCAACAAAGGTTGATGCTATAGAGGTTACTTCTTTAGACTCCGAAAAGTTGCCAGAAATTAAACCTAGTAAACCTAATGAGGTCTTAGTGCCTTCCAGTGGAATACATAATAATCAGAATGTTACACAAGGAATGGATATTGATGTATTCCAGCGTAACCACCACCAACCTGAACCTTTAGGAGATGACACAAATGGTGGGGCTAGTGTCAGTTATCCAAAATCAAGCCAACTTAGCAGTCCTCCACCATCAAGTGCAAGCTCTGTTGTGAGGGCGTTTTCAGCACCACCTTCATCGAGGCCTCCAAATGTTCGATTAGTGCAGTCACTTAAGACAATGTCAGGTTATCCCGAGCACTGA 1398 0.4964 MEKEKMKCPYCSAAAGRCATTSSGRSITECTSCGRVMEERQSHPHHVFHLRAQDNPLCLATSDLPLPTLHHQNDAGDEEDPFEPTGFLTAFSTWSLEPSPLYLQSSIAFSGHLAELERTLESSSSSSATVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATAALVHAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCTLLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPERAFPTTVIASARSSTKVDAIEVTSLDSEKLPEIKPSKPNEVLVPSSGIHNNQNVTQGMDIDVFQRNHHQPEPLGDDTNGGASVSYPKSSQLSSPPPSSASSVVRAFSAPPSSRPPNVRLVQSLKTMSGYPEH* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0445 465 MobiDBLite consensus disorder prediction 399 465 - -
Lja2g0445 465 MobiDBLite consensus disorder prediction 414 440 - -
Lja2g0445 465 CDD CYCLIN 237 315 IPR013763 -
Lja2g0445 465 SMART cyclin_7 235 316 IPR013763 -
Lja2g0445 465 SMART cyclin_7 139 220 IPR013763 -
Lja2g0445 465 Pfam Transcription factor TFIIB repeat 137 218 IPR013150 GO:0017025
Lja2g0445 465 Pfam Transcription factor TFIIB repeat 235 316 IPR013150 GO:0017025
Lja2g0445 465 PANTHER PLANT-SPECIFIC TFIIB-RELATED PROTEIN 1 6 399 - -
Lja2g0445 465 Gene3D - 135 226 - -
Lja2g0445 465 SUPERFAMILY Cyclin-like 233 331 IPR036915 -
Lja2g0445 465 Gene3D - 235 331 - -
Lja2g0445 465 PRINTS Transcription initiation factor IIB signature 23 43 IPR000812 GO:0006352|GO:0070897
Lja2g0445 465 PRINTS Transcription initiation factor IIB signature 181 200 IPR000812 GO:0006352|GO:0070897
Lja2g0445 465 PRINTS Transcription initiation factor IIB signature 207 222 IPR000812 GO:0006352|GO:0070897
Lja2g0445 465 PRINTS Transcription initiation factor IIB signature 302 316 IPR000812 GO:0006352|GO:0070897
Lja2g0445 465 PRINTS Transcription initiation factor IIB signature 270 286 IPR000812 GO:0006352|GO:0070897
Lja2g0445 465 PRINTS Transcription initiation factor IIB signature 236 254 IPR000812 GO:0006352|GO:0070897
Lja2g0445 465 CDD CYCLIN 137 218 IPR013763 -
Lja2g0445 465 SUPERFAMILY Cyclin-like 136 226 IPR036915 -
Lja2g0445 465 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 6 399 IPR000812 GO:0006352|GO:0070897
Lja2g0445 465 MobiDBLite consensus disorder prediction 363 386 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0445 K03124 - gmx:102662353 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0445 2 4071049 4074232 Lja2g0445 2 4071049 4074232 ECH