Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0418 ATGATCAAACTTTTCAAAGTTAAGGAAAAGCAGAGAGAACAGGCTGAAAATGCAAGTGGTGGACCACCTGTTAAGAAGCAAAGTGCTGGCGAGTTGCGTCTTCATAAAGATATAAGTGAGCTGAATCTACCAAAATCCTGTACCATAACATTCCCCAATGGCAAAGATGACCTGATGAACTTTGAAGTTTCAATTCGACCAGATGATGGATTTTACTTAGGTGGCACATTTTTGTTCACATTCCAAGTGTCTCCCATCTATCCCCATGAAGCACCGAAGGTGAAGTGCAAGACAAAGGTCTACCATCCTAATATTGATTTGGAGGGAAATGTTTGTTTGAACATCTTACGAGAAGACTGGAAGCCTGTCCTTAATATAAACACTGTCATCTATGGCTTGTATCATCTCTTTACGGAACCAAATTCTGAGGATCCTCTGAATCATGAAGCCGCAACTGTGCTGAGAGAGAACCCAAAGTTGTTCGAATCTAATGTGAGGAGGGCAATGGCTGGTGGGTACGTGGGACAAACCTTTTTCCCACGCTGTATGTAA 552 0.4221 MIKLFKVKEKQREQAENASGGPPVKKQSAGELRLHKDISELNLPKSCTITFPNGKDDLMNFEVSIRPDDGFYLGGTFLFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLYHLFTEPNSEDPLNHEAATVLRENPKLFESNVRRAMAGGYVGQTFFPRCM* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0418 183 SMART ubc_7 32 174 - -
Lja2g0418 183 CDD UBCc 33 167 IPR000608 -
Lja2g0418 183 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Lja2g0418 183 SUPERFAMILY UBC-like 18 181 IPR016135 -
Lja2g0418 183 Gene3D Ubiquitin Conjugating Enzyme 25 183 IPR016135 -
Lja2g0418 183 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 173 - -
Lja2g0418 183 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
Lja2g0418 183 MobiDBLite consensus disorder prediction 10 29 - -
Lja2g0418 183 PANTHER - 10 173 - -
Lja2g0418 183 Pfam Ubiquitin-conjugating enzyme 33 168 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0418 Lja-Chr2 3796459 3800746 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0418 K10579 - gmx:100813186 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0418 2 3796459 3800746 Lja2g0418 2 3796459 3800746 ECH