Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0402 ATGCAGAACTATAGAATTCTCAGACCATTCTTCTCCGAGCTGCAACTGCAACTACGTTCCTACGTCGTTCCTCGTGACCCCTTCCCCTCCAAAGTTTCCCACTACCTCACCCGCGCCAAGCTCATCGACTCCATTCGCCTCACTCTCCGTTCCGACACCGCCAACTCTTCACTCCCCACTCTCGTCAACCACCGTCTCGTAGACTCCTTCGTCGTCACCCACGCCCTCCGTTCCGCCCCTTCTGCAGATTCCGCACTCTCCCTCCTCCATGCACTCGAGGATAGCCCCTATTTTTCCCATACCCAAAACACCCTCCATGCCCTCGCCACCGTGCTCGCCAAGTCCGGTCGACGCGCCGAGCTCAAATCACTCTTGGATGATATCGAAGCGAAACGGTTCGGCAATGTTAAGTTCAGCTTGATGACCCTCTTGCAGTGGCATGCTGCTGCTAGGGATGTTGACTCTGCTCTTAGGGTTTGGGATCAGTATAGGCTTGACAATACTCATGCCTGCACTGAATCTTACAATGTTGTTATGGCTCTTTGTGTTGAAATGGGGAATGACGCGGAGGCGGTGCGAGTTTTTCAAAGGATGATTGATGAAGGGTCGCTTCCGAATTGCAGAAGCTGTACTATTATAATGGAGCACCTTGTGAAATCCCAGAAATTGGCTGAAGCCATGGAAGTTTTTAACATGATGCCTTTGATGAGGATCAAACGCACTGGGAAACAGTACTCCATTTTGATTGAAGGTTTCGCTGGGAGCAAACGGTTCGGTGAAGTCGGAATTTTAGTTAATGAGATGCAAGTTGATGGTATAATGCCTAGCCGAGAAGTGAGTCTGTCACTGCAGCAGATGCAGGAGGAAGGACTTCTTAAGGGTGTGGACGAGTTTCTTAGAGAATTGTTACGAGATGAAGGAAATCAGGGAATCAAGAATGTGAGATATTCTATTGATAGTGGTGAGGAGGATGAAGGAGACGACGAAGATGAGAGCGAGAATAATGTTGATGGGATACACTTGAAACCGTGGCTTGACCCGCAGGCTTTGGCTAGTGCCTTGAAGAATTGGAGTCCTGATGAGGTATCAGCACTAGAAGGTGCAAACTTTGTGTGGACGACCAGGTTGGTCTGCAAGATACTTAGAAAATTGAAGTCACCAGAAACTGCATGGAATTTCTTCTGTTGGGTTACTAATCAACCTGGATTTACTCATAACATAAACACGGTGCAAAGAGTCATGACCCTTCTAGCACGCCATGGACATTCTGAATTGGTTGATAAGCTCATCTCCAAGATTAGAGCAGAGGGAATGAGACTGCCATTCAGCACCATCAGGCTAATTATTGATTTTTATGGGCTTTCCAAAAATGCTGATGCTGCTCTGAAGGTTTTCAATAATGATAGAATACTTTGTGGGCCCATATCAAATGTTAATCTGATGCTTCTGTATTCCTCTCTTCTAAGAACATTAACCAAGTGTGGAAGGAATTCCGATGCCCTGGATATGCTTGATGAGATGATTTTAAATGGAATTTGTCCAGATATCCAAACATTTTCAGGTCTAATGCACTATTTTGCAAACCTTGGAGACATTAAAACGGTGCGGAAGCTCTTTACAATGGTCAGGCAGATCGGTTTAGAGCCAGATGCTTATCTGTATAAGATACTAATCGAAGGTTATTGCAACTCAAAAAGAGCTGCACTGGCATGGAAGCTATTTGAAGACATGAAGAATTCAGGTTTCTTGCCTGACTCTGCCACCAAAATGTTGCTAGTGAAGAGTCTCTGGAAAGAAGGGAAACGGAAAGAGGCTGCAGCAGTGGAAGAGAGCTGTGAGGAAATCAAGTCACCCCTTCCACTTGCATTGCCTGGTCATTCATGGACTGTCAGTTCTGCAGATCTCACAAGAGTCTACAATATTTATTCAAATTCTTTTGCGTCAAATGATGGTTAG 1956 0.4576 MQNYRILRPFFSELQLQLRSYVVPRDPFPSKVSHYLTRAKLIDSIRLTLRSDTANSSLPTLVNHRLVDSFVVTHALRSAPSADSALSLLHALEDSPYFSHTQNTLHALATVLAKSGRRAELKSLLDDIEAKRFGNVKFSLMTLLQWHAAARDVDSALRVWDQYRLDNTHACTESYNVVMALCVEMGNDAEAVRVFQRMIDEGSLPNCRSCTIIMEHLVKSQKLAEAMEVFNMMPLMRIKRTGKQYSILIEGFAGSKRFGEVGILVNEMQVDGIMPSREVSLSLQQMQEEGLLKGVDEFLRELLRDEGNQGIKNVRYSIDSGEEDEGDDEDESENNVDGIHLKPWLDPQALASALKNWSPDEVSALEGANFVWTTRLVCKILRKLKSPETAWNFFCWVTNQPGFTHNINTVQRVMTLLARHGHSELVDKLISKIRAEGMRLPFSTIRLIIDFYGLSKNADAALKVFNNDRILCGPISNVNLMLLYSSLLRTLTKCGRNSDALDMLDEMILNGICPDIQTFSGLMHYFANLGDIKTVRKLFTMVRQIGLEPDAYLYKILIEGYCNSKRAALAWKLFEDMKNSGFLPDSATKMLLVKSLWKEGKRKEAAAVEESCEEIKSPLPLALPGHSWTVSSADLTRVYNIYSNSFASNDG* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0402 651 Gene3D Tetratricopeptide repeat domain 71 319 IPR011990 GO:0005515
Lja2g0402 651 PANTHER OS01G0167750 PROTEIN 15 649 IPR044175 -
Lja2g0402 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Lja2g0402 651 Pfam PPR repeat 484 512 IPR002885 -
Lja2g0402 651 Pfam PPR repeat 174 202 IPR002885 -
Lja2g0402 651 TIGRFAM PPR: pentatricopeptide repeat domain 174 207 IPR002885 -
Lja2g0402 651 TIGRFAM PPR: pentatricopeptide repeat domain 553 586 IPR002885 -
Lja2g0402 651 TIGRFAM PPR: pentatricopeptide repeat domain 484 516 IPR002885 -
Lja2g0402 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Lja2g0402 651 MobiDBLite consensus disorder prediction 315 334 - -
Lja2g0402 651 Gene3D Tetratricopeptide repeat domain 479 644 IPR011990 GO:0005515
Lja2g0402 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Lja2g0402 651 Pfam PPR repeat family 549 596 IPR002885 -
Lja2g0402 651 Gene3D Tetratricopeptide repeat domain 362 473 IPR011990 GO:0005515
Lja2g0402 651 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0402 445 615 Glycosyltransferase AT1G05670 26.744 8.32e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0402 - - cam:101514749 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0402 2 3693083 3695663 Lja2g0402 2 3693083 3695663 ECH