Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0380 ATGTCATCTAGAAAAGGACGCATATTTTTAGACGAAGGTAGCGTCCACGGAAGAAGGTTCGGCAAGTTAAAAAAGGACGGCGGCCCGGCCGACGAATTCGACGGTTACAACTCCGACAACCACCCAAGAAAAAACAGCCCCGTCAGAATCGACGCACCGCATTTGGATCCTCAAATGGTAGCAGACAATTCCCCTTACGATACAGCCCTCTCCCCATTATCCAAATCTCCATGGTCCTCTCACATGAACGAGGAAAGCTCCACCTCCAACAACAACGAAGCCCTGGTGGGGTCCCTCATCCGTGAAGAAGGCCATGTATACTCCCTCGCCGCCACGAAGGACCTTCTTTACACCGGCTCCGACAGCAAGAACATTCGTGTCTGGAAGAATCAGAAGGAGTTCGCGGGGTTTAAATCCAACAGTGGCTTGGTGAAAGCCATTGTCATTGCAGGAGAGAAGATTTTGACAGGACACCAAGATGGAAGAATCCGAGTCTGGAAAGTCTCTGGAAAAAACGAGCAGAATCACAAGCGTGTTGCCACATTGCCAACGCTGAGAAACTTCATCAAATGCTCAATGAAACCAAGCAATTACGTTGAGGTGAGAAGGCATCGCAATGTGCTTTGGATCAAGCACTACGATGCGATTTCATGTCTTAGTTTAACAGAGGATCATTCTCTGATTTACTCTGCTTCGTGGGATAAGACATTCAAGGTGTGGCGAGCTTCGAATTTCAAGTGTTTGGAATCTGTAACTGCTCATGATGATGCGGTTAACGCGTTGGTGGTGGCGTCCGACGGGCTGGTTTTCACCGGGTCGGCGGACGGCTCGGTGAAGATATGGCGGCGGGAGGTGCAGGGGAAGGGGACAAAGCATTTCTTCTCACAGACGCTGTTGAAGCAAGAGTGCGCGGTGACAGCGTTGGCTATAAACAGCGACGGGGACGTTTTGTATTGTGGATCCTCCGACGGGCTGTTGAATTTCTGGGTGAAGGAGACGAGTTACGAGCACGGCGGGGTGTTGAGGGGGCACAAGCTGGCGGTTTTGTGTCTTGCGACGGCGGGGAGTTTGGTGTTCAGCGGTTCTGCTGACATGGCTATCTGCGTGTGGAAGAGGTCGGCGTTGAGCAACGAGCATGCGTGTATCACGGTGCTGTCGGGGCATAGTGGGCCGGTGAAGTGTCTGGCGGCGGAGAAGGATCCGGAGGCGATGTGTAATGAGCGACGGTGGATATTGTATAGTGGGAGTTTGGACAAGTCGGTGAAGGTGTGGAAGGTGTCGGAGAGTTTGCCACCTGGGCAGCAACCGCCGCAGCACAACTACCAGCCACGGCTGAGTGCTGAGTTCCCAAGAGTTTCTTCGTTGAAGAAAATGGGGTCGAGAAGATTGTAA 1392 0.523 MSSRKGRIFLDEGSVHGRRFGKLKKDGGPADEFDGYNSDNHPRKNSPVRIDAPHLDPQMVADNSPYDTALSPLSKSPWSSHMNEESSTSNNNEALVGSLIREEGHVYSLAATKDLLYTGSDSKNIRVWKNQKEFAGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNEQNHKRVATLPTLRNFIKCSMKPSNYVEVRRHRNVLWIKHYDAISCLSLTEDHSLIYSASWDKTFKVWRASNFKCLESVTAHDDAVNALVVASDGLVFTGSADGSVKIWRREVQGKGTKHFFSQTLLKQECAVTALAINSDGDVLYCGSSDGLLNFWVKETSYEHGGVLRGHKLAVLCLATAGSLVFSGSADMAICVWKRSALSNEHACITVLSGHSGPVKCLAAEKDPEAMCNERRWILYSGSLDKSVKVWKVSESLPPGQQPPQHNYQPRLSAEFPRVSSLKKMGSRRL* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0380 463 CDD WD40 103 425 - -
Lja2g0380 463 Gene3D - 207 447 IPR015943 GO:0005515
Lja2g0380 463 Gene3D - 85 206 IPR015943 GO:0005515
Lja2g0380 463 SMART WD40_4 334 371 IPR001680 GO:0005515
Lja2g0380 463 SMART WD40_4 378 425 IPR001680 GO:0005515
Lja2g0380 463 SMART WD40_4 291 330 IPR001680 GO:0005515
Lja2g0380 463 SMART WD40_4 244 282 IPR001680 GO:0005515
Lja2g0380 463 SMART WD40_4 92 129 IPR001680 GO:0005515
Lja2g0380 463 SMART WD40_4 203 241 IPR001680 GO:0005515
Lja2g0380 463 SMART WD40_4 130 167 IPR001680 GO:0005515
Lja2g0380 463 MobiDBLite consensus disorder prediction 18 50 - -
Lja2g0380 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 298 329 IPR001680 GO:0005515
Lja2g0380 463 Pfam WD domain, G-beta repeat 212 240 IPR001680 GO:0005515
Lja2g0380 463 Pfam WD domain, G-beta repeat 246 281 IPR001680 GO:0005515
Lja2g0380 463 Pfam WD domain, G-beta repeat 381 425 IPR001680 GO:0005515
Lja2g0380 463 Pfam WD domain, G-beta repeat 103 129 IPR001680 GO:0005515
Lja2g0380 463 Pfam WD domain, G-beta repeat 303 329 IPR001680 GO:0005515
Lja2g0380 463 Pfam WD domain, G-beta repeat 339 371 IPR001680 GO:0005515
Lja2g0380 463 SUPERFAMILY WD40 repeat-like 98 433 IPR036322 GO:0005515
Lja2g0380 463 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 2 441 IPR045182 -
Lja2g0380 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 250 IPR001680 GO:0005515
Lja2g0380 463 MobiDBLite consensus disorder prediction 64 91 - -
Lja2g0380 463 PANTHER BNAANNG11810D PROTEIN 2 441 - -
Lja2g0380 463 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 281 IPR001680 GO:0005515
Lja2g0380 463 PRINTS G protein beta WD-40 repeat signature 154 168 IPR020472 -
Lja2g0380 463 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Lja2g0380 463 PRINTS G protein beta WD-40 repeat signature 412 426 IPR020472 -
Lja2g0380 463 MobiDBLite consensus disorder prediction 18 91 - -
Lja2g0380 463 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 251 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0380 Lja-Chr2 3477665 3479056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0380 209 426 Miscellaneous Gene Families AT5G08390 23.767 1.57e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0380 - - gmx:100778593 781.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0380 2 3477665 3479056 Lja2g0380 2 3477665 3479056 ECH