Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0368 ATGGTATCCGAATCGGAGCTAATCGGCCGCCTCCGCGAGTTCCTCCGGAGCTCCGACCTCAACACCACCACCACCGCCACCGTCCGCCGCCAATTAGAGTCCGATTTCGGAATCGATTTGTCCGATAGAAAGGCATTCATCAGGGAACAGGTCGACCTCTTCCTTCAAACCGAGCACCAACCACAAGAAGAAGAACAACACGATGACCAGGAAGAACCTCAAAACGACGACGTAGAAGAAAGCCAACACTCTGATTCCAAGGAAGAAACCGAAGAAGAAGAAGACGAAGACGGTGATAATGAAAACAACAAACCTAAGCGCGCCAAGGCTGCGAAGAAGAAGAAGAATAAAGAACGATCTAACAAGTCAGATAATGAGGTAGTGAAGAAAAAAGGTGGTGGTTTTTGTAAATTATGTAGCCTGTCTCCACAACTTCAAGAATTCACTGGAGTACCAGAAATGGCCAGGACTGAGGTTGTTAAGCAATTATGGGTCTACATTAAGGAGAAAGATTTGCAAGACCCAAGCAATAGGCGAAATATCCTTTGTGATGAATCATTGCGTGCCCTTTTTGGTGTCAATTCCATAAACATGTTCCAAATGAACAAAGCATTGTCAAAGCATATCTGGCCATTGGATTCAGATGACGTTGTCCAGGTAAAGCCGGCACCAAAGCAAAAGCAGAAGAAACAAGAGAGAGAAGATGATTTAGATGAGCCAAAAACAAAGGAAAAACGGCAAAAGGGAGAGAAAGGAAAATCTCCATCAGGTTTTCTTGCTCCTCTCCAGCTATCTGATGCCCTTGTAAACTTCCTTGGTACTGGAGAAAGTGAATTATCAAGATCTGATGTCATAAAAAGAATGTGGGAATACATAAAAGGAAACGACCTTCAGGATCCTTCTGACAAGAGGAAAATATTATGCGACGACAAGCTGAAAGAACTCTTTGATGTGGACTCCTTTAACGGCTTCACCGTTACAAAACTGTTGACTCCTCATTTTATAAAGGCAGAGCAGTGA 1020 0.4373 MVSESELIGRLREFLRSSDLNTTTTATVRRQLESDFGIDLSDRKAFIREQVDLFLQTEHQPQEEEQHDDQEEPQNDDVEESQHSDSKEETEEEEDEDGDNENNKPKRAKAAKKKKNKERSNKSDNEVVKKKGGGFCKLCSLSPQLQEFTGVPEMARTEVVKQLWVYIKEKDLQDPSNRRNILCDESLRALFGVNSINMFQMNKALSKHIWPLDSDDVVQVKPAPKQKQKKQEREDDLDEPKTKEKRQKGEKGKSPSGFLAPLQLSDALVNFLGTGESELSRSDVIKRMWEYIKGNDLQDPSDKRKILCDDKLKELFDVDSFNGFTVTKLLTPHFIKAEQ* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0368 339 MobiDBLite consensus disorder prediction 221 252 - -
Lja2g0368 339 MobiDBLite consensus disorder prediction 221 259 - -
Lja2g0368 339 SUPERFAMILY SWIB/MDM2 domain 251 337 IPR036885 -
Lja2g0368 339 SUPERFAMILY DEK C-terminal domain 3 56 - -
Lja2g0368 339 Pfam SWIB/MDM2 domain 261 334 IPR003121 -
Lja2g0368 339 Pfam SWIB/MDM2 domain 138 209 IPR003121 -
Lja2g0368 339 Gene3D SWIB/MDM2 domain 252 339 IPR036885 -
Lja2g0368 339 SUPERFAMILY SWIB/MDM2 domain 130 213 IPR036885 -
Lja2g0368 339 Pfam DEK C terminal domain 2 55 IPR014876 -
Lja2g0368 339 PANTHER YTH DOMAIN-CONTAINING PROTEIN 1 ISOFORM X1 83 337 - -
Lja2g0368 339 PANTHER YTH DOMAIN-CONTAINING PROTEIN 1 ISOFORM X1 1 74 - -
Lja2g0368 339 CDD SWIB-MDM2_like 139 209 - -
Lja2g0368 339 MobiDBLite consensus disorder prediction 59 127 - -
Lja2g0368 339 Gene3D - 1 59 - -
Lja2g0368 339 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 83 337 - -
Lja2g0368 339 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 1 74 - -
Lja2g0368 339 Gene3D SWIB/MDM2 domain 129 217 IPR036885 -
Lja2g0368 339 ProSiteProfiles SWIB/MDM2 domain profile. 257 336 IPR003121 -
Lja2g0368 339 ProSiteProfiles SWIB/MDM2 domain profile. 134 211 IPR003121 -
Lja2g0368 339 SMART swib_2 135 214 IPR019835 -
Lja2g0368 339 SMART swib_2 258 339 IPR019835 -
Lja2g0368 339 CDD SWIB-MDM2_like 262 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0368 Lja-Chr2 3389402 3394775 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lja2g0368 SWIB 1.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0368 K15223 - gmx:100786835 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0368 2 3389402 3394775 Lja2g0368 2 3389402 3394775 ECH