Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0344 ATGTCGAGATTGAGTTTCCTCAAGTTTCAAGGTAGCTTCTCAGGGAAGCCAACCTCTCCACGCAAAAATCAACCCAGGAAGAACAGCTTCAACTCAAGACAAACATCAACAGCAGGACTGAATTTCTGCCCAAACAAAGATGAAATGAAATGGGTGTTCGGGAAATTCGACTCCAACAAAGATGGCAAGATTAGCCTCCAAGAGTACAAGGAAGCAGCGAGGGCCTTGGACAGGGGTGTTGGGGAAACAGAGGCAGCAAAGACATTCAAAGTCATGGACTCGGACGGAGATGGGTTCATTGACTTCATTGAGTTCATGGAAATGTTCAATGGAGATCAGGGAAGTAGGATCAAAGAAGAGGAGATTAAGAGTGCTTTTCAAGTGTTTGATTTCAACGGTGATGGCAAAATCAGTGCTGAGGAATTATTGAGAGTTCTCAAAAGCCTGGGAGAGAGTTGCAGCCTCAGTGCTTGTAAGAAAATGGTTAAGGGGGTGGATGGGAATGGGGATGGTTTTATAGACTTGAATGAGTTTATGAGGATGATGATGAGTGGCAAGAAACTCGCTTAA 570 0.4439 MSRLSFLKFQGSFSGKPTSPRKNQPRKNSFNSRQTSTAGLNFCPNKDEMKWVFGKFDSNKDGKISLQEYKEAARALDRGVGETEAAKTFKVMDSDGDGFIDFIEFMEMFNGDQGSRIKEEEIKSAFQVFDFNGDGKISAEELLRVLKSLGESCSLSACKKMVKGVDGNGDGFIDLNEFMRMMMSGKKLA* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0344 189 MobiDBLite consensus disorder prediction 1 40 - -
Lja2g0344 189 ProSiteProfiles EF-hand calcium-binding domain profile. 117 152 IPR002048 GO:0005509
Lja2g0344 189 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Lja2g0344 189 ProSitePatterns EF-hand calcium-binding domain. 130 142 IPR018247 -
Lja2g0344 189 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 188 - -
Lja2g0344 189 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Lja2g0344 189 Gene3D - 115 188 - -
Lja2g0344 189 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Lja2g0344 189 ProSiteProfiles EF-hand calcium-binding domain profile. 153 188 IPR002048 GO:0005509
Lja2g0344 189 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Lja2g0344 189 Gene3D - 6 114 - -
Lja2g0344 189 SMART efh_1 157 185 IPR002048 GO:0005509
Lja2g0344 189 SMART efh_1 84 112 IPR002048 GO:0005509
Lja2g0344 189 SMART efh_1 48 76 IPR002048 GO:0005509
Lja2g0344 189 SMART efh_1 121 149 IPR002048 GO:0005509
Lja2g0344 189 PANTHER CALCIUM-BINDING PROTEIN CML34-RELATED 1 188 - -
Lja2g0344 189 CDD EFh 48 109 IPR002048 GO:0005509
Lja2g0344 189 CDD EFh 121 183 IPR002048 GO:0005509
Lja2g0344 189 ProSitePatterns EF-hand calcium-binding domain. 166 178 IPR018247 -
Lja2g0344 189 SUPERFAMILY EF-hand 46 184 IPR011992 -
Lja2g0344 189 Pfam EF-hand domain pair 119 182 IPR002048 GO:0005509
Lja2g0344 189 Pfam EF-hand domain pair 47 109 IPR002048 GO:0005509
Lja2g0344 189 PRINTS Recoverin family signature 135 153 - -
Lja2g0344 189 PRINTS Recoverin family signature 88 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0344 Lja-Chr2 3139155 3140004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0344 1 184 EF-hand Containing Proteins AT2G15680 43.750 5.74e-44 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0344 K13448 - gmx:100787013 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0344 2 3139155 3140004 Lja2g0344 2 3139155 3140004 ECH