Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0318 ATGGACTCGGTTGTTCTCCATCTCGACCGTTTCCCTCTACTCTCCGCCACTCACCGCCCAACATGGAATCCACGCGCTGCCGCTTCCTTCCGCTGCTTCCACCGCTCCCTTCCTATTCCAACCCTCCGTGGCTCGCCGCTTCTCGCTGCCAACAATTCTGTTCCGCCAAAAAATGGAGTGTACACTGTTGGTGACTTTATGACAAAGAGAGAGGATTTACATGTGGTAAAGCCCACAACAACTGTGGATGAAGCTCTGGAAATGCTTGTTGAACATAGGGTAACTGGTTTTCCCGTGATTGATGATAAGTGGAACCTAGTTGGTGTTGTTTCAGATTACGACTTGTTAGCACTGGACTCTATATCAGGTAATGGGAGGAAGGAGAGTAGCATGTTTCCAGAAGTTGACAGTTCTTGGAAAACTTTCAATGAGGTGCAGAATCTGTTGAGTAAGACAAACGGGAAGGTAATCGGTGAATTAATGACTACTGCCCCTATGGTCGTTCGGGAGAACACCAATCTTGAGGATGCTGCCAGGTTGTTGCTAGAAACAAAGTTTAGACGCCTTCCAGTTGTAGATTCTGAAGGTAGACTGGTTGGGATTATCACCAGAGGAAATGTTGTAGGAGCCGCTCTTCAAATTAAACGAGCTATCCAAAACAAAGCATGA 669 0.4694 MDSVVLHLDRFPLLSATHRPTWNPRAAASFRCFHRSLPIPTLRGSPLLAANNSVPPKNGVYTVGDFMTKREDLHVVKPTTTVDEALEMLVEHRVTGFPVIDDKWNLVGVVSDYDLLALDSISGNGRKESSMFPEVDSSWKTFNEVQNLLSKTNGKVIGELMTTAPMVVRENTNLEDAARLLLETKFRRLPVVDSEGRLVGIITRGNVVGAALQIKRAIQNKA* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0318 222 ProSiteProfiles CBS domain profile. 161 218 IPR000644 -
Lja2g0318 222 SUPERFAMILY CBS-domain pair 60 210 IPR046342 -
Lja2g0318 222 Pfam CBS domain 63 117 IPR000644 -
Lja2g0318 222 Pfam CBS domain 157 209 IPR000644 -
Lja2g0318 222 Gene3D - 58 218 IPR046342 -
Lja2g0318 222 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX2, CHLOROPLASTIC 11 220 - -
Lja2g0318 222 PANTHER CBS DOMAIN-CONTAINING PROTEIN CBSX1, CHLOROPLASTIC-LIKE 11 220 - -
Lja2g0318 222 CDD CBS_pair_plant_CBSX 69 210 - -
Lja2g0318 222 ProSiteProfiles CBS domain profile. 67 128 IPR000644 -
Lja2g0318 222 SMART cbs_1 72 120 IPR000644 -
Lja2g0318 222 SMART cbs_1 164 212 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0318 Lja-Chr2 2858852 2865140 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0318 - - gmx:100802500 324.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0318 2 2858852 2865140 Lja2g0318 2 2858852 2865140 ECH