Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0174 ATGTTGCGGAATTGCGGACAAATGCGGCTTGATGTGGCCGCAATTGGTGTCGTGATGCCGTTTTGGGGAATCAAAAACCATTTACGTTGTGGCCGCAATTGTGGACCACAATTTAAAACCCTGTGTTATAGTGCCAGCCATTGTCTAAGTAAGAATTTTCTCACCAAACTTGCTCCACTTGAAGCAGTTCTCTTTGATATAGATGGAACTCTTTGTGATTCCGATCCCCTCCACTACGATGCTTTACGTGAAATGCTCCAGGAGATTGGTTTTAATGGAGGTATTCCTATTACAGAGGAGTTTTTCATTAAGAACTTTGCTGGCAAGCACAGTAATGATACAGCCTTGTTTGTTTTTCCTGGTGATCTTGAACGAGGTTTAAAGTTTGTAGAAGAAAAGGAAGCCATGTTTCGGAGATTGGCGGCTGAGCAACTGAAGCCTTTAAGTGGTCTTGATAAAGTGATGAAATGGATTGAAAATCATGGATTGAAACGAGCTGCCGTTACCAATGCTCCAAGAGAAAACGCAGAACTCATTATCTCAAAACTTGGTCTCTCATATTTCTTTGATGCTGTTATTCTTGGTGATGAATGTGAACATGCCAAGCCTCATCCAGAACCCTATTTGAAAGGTCTTGAAGCTCTGAAGGCATCAAAGAATCACACATTTGTATTTGAGGATTCTGTGTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATGCCTGTTATAGGTTTAGCTACCCGAAACCCCGAGGATTTACTCATGGAAGCAAAGCCTGCTTTTCTGATTAAGGATTATGACGATCCAAAATTGTGGGCAGCTCTGGAAGAACTTGACAATGCTGGTACTAGTTAA 855 0.4222 MLRNCGQMRLDVAAIGVVMPFWGIKNHLRCGRNCGPQFKTLCYSASHCLSKNFLTKLAPLEAVLFDIDGTLCDSDPLHYDALREMLQEIGFNGGIPITEEFFIKNFAGKHSNDTALFVFPGDLERGLKFVEEKEAMFRRLAAEQLKPLSGLDKVMKWIENHGLKRAAVTNAPRENAELIISKLGLSYFFDAVILGDECEHAKPHPEPYLKGLEALKASKNHTFVFEDSVSGIKAGVAAGMPVIGLATRNPEDLLMEAKPAFLIKDYDDPKLWAALEELDNAGTS* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0174 284 Pfam Haloacid dehalogenase-like hydrolase 63 244 IPR041492 -
Lja2g0174 284 SFLD Haloacid Dehalogenase 60 268 - -
Lja2g0174 284 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 158 171 IPR006439 -
Lja2g0174 284 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 60 71 IPR006439 -
Lja2g0174 284 PRINTS Haloacid dehalogenase/epoxide hydrolase family signature 189 205 IPR006439 -
Lja2g0174 284 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 60 268 - -
Lja2g0174 284 Gene3D - 61 268 IPR023214 -
Lja2g0174 284 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 50 281 - -
Lja2g0174 284 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 132 244 IPR006439 -
Lja2g0174 284 SUPERFAMILY HAD-like 46 277 IPR036412 -
Lja2g0174 284 CDD HAD_BPGM-like 62 247 - -
Lja2g0174 284 Gene3D Putative phosphatase; domain 2 75 143 IPR023198 -
Lja2g0174 284 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 50 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0174 Lja-Chr2 1505941 1508681 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0174 - - gmx:100805421 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0174 2 1505941 1508681 Lja2g0174 2 1505941 1508681 ECH