Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0172 ATGACGGCTTCTTCTGCGAATCGCGTTGAAAGCCAGAGTTCTCTCACAAGACTTGCTCCGCTTGAAGCAGTGCTCTTTGATATAGACGGGACCCTTTGTGATTCTGATCCTCTCCACTATTATGCTTTTCGTGAAATGCTTCAGGAGATTGGTTTCAATGGAGGTGTTCCCATAACAGAGGAATTTTTTATTGAGACTGTTGCTGGCAAGCACAATGATGATATTGCAGCGGCTCTCTTTCCCGGTGACCTGGAACGAGGTTTGAAGTTTGTAGATGATAAGGAAGCCATGTTTCGGAGATTGGCGGCTGAGCAAGTAAAGCCTTTAAATGGTCTTGATAAAGTGAGGAAATGGATCGAAGATCGTGGATTGAAGCGAGCTGCAGTTACTAATGCTCCTAGAGCAAATGCAGAACTCATGCTCTCAATATTAGGTCTCACAGATTTCTTTGAGGCTGTTATTATTGGTGGTGAATGTGAACATGCCAAGCCTCATCCAGAACCCTACTTGAAAGGTCTTGAAGCTCTGAAGGCATCAAAGGATCACACATTTGTATTTGAGGATTCTGTCTCAGGAATCAAAGCTGGAGTGGCAGCTGGGATGCCAGTTATAGGTATAGCTACCCGAAACCCAGAGGATTTACTGATGGAAGCAAAGCCTGCCTTTCTGATAAAGGATTATGCCGATCCTAAATTGTGGGCGGCTTTGGAAGAACTTGACAAGACTAATGCTTCTTAG 738 0.4444 MTASSANRVESQSSLTRLAPLEAVLFDIDGTLCDSDPLHYYAFREMLQEIGFNGGVPITEEFFIETVAGKHNDDIAAALFPGDLERGLKFVDDKEAMFRRLAAEQVKPLNGLDKVRKWIEDRGLKRAAVTNAPRANAELMLSILGLTDFFEAVIIGGECEHAKPHPEPYLKGLEALKASKDHTFVFEDSVSGIKAGVAAGMPVIGIATRNPEDLLMEAKPAFLIKDYADPKLWAALEELDKTNAS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0172 245 SFLD C1.5.6: HAD, Beta-PGM, Phosphatase Like 21 229 - -
Lja2g0172 245 PANTHER 6-PHOSPHOGLUCONATE PHOSPHATASE 3 243 - -
Lja2g0172 245 Gene3D Putative phosphatase; domain 2 36 104 IPR023198 -
Lja2g0172 245 SUPERFAMILY HAD-like 18 239 IPR036412 -
Lja2g0172 245 CDD HAD_BPGM-like 23 208 - -
Lja2g0172 245 SFLD Haloacid Dehalogenase 21 229 - -
Lja2g0172 245 Gene3D - 22 229 IPR023214 -
Lja2g0172 245 TIGRFAM HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 96 206 IPR006439 -
Lja2g0172 245 Pfam Haloacid dehalogenase-like hydrolase 24 206 IPR041492 -
Lja2g0172 245 PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN SGPP 3 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0172 Lja-Chr2 1479629 1482062 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0172 - - gmx:100802762 448.743