Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0169 ATGGATTCACAGCAGAACAACAATCTCTTCGACACCGCTTCGCAACCCGACACCGCCAACGACGCTTACACTTTCCTCGAATTCAACACTCAGGGAGAAGATTTCGACTACCCGGAGTTTCGCGACCCGATTAGGTCACCGGTGGCATGGCCTACACCGTCCGATTCGCTGGCTGACCCGTCTGAGCGAGGTGGAGCCGGGTCGGACCAACAGTCTGATGCCTCGCCTGTTTCGGTGGCTCCTGGAAGCGCGACCAAGGGGCGGTCTGGGAGCAGCGGTGGGAGTAGCCAGGTGGTGGATGCACTGGCTGCGGGGATGAGCGGGTTGAATTTCGAGGATACTGGGGATGATGATAATTATGAGTATGGTAAAGGGGATTTCACTGAACATGCTTGTCGTTATTGCGGGGTTTCCAATCCTGCGTGTGTCGTGAGGTGCAATGTGCCTTCCTGTCGCAAATGGTTCTGTAATTCGCGGGGGAACACTTCCGGATCGCATATCGTGAATCACCTGGTTCGAGCAAAACACAAGGAAGTATGTCTACACAAAGATAGTCCATTGGGAGAAACTATTCTTGAATGCTACAACTGCGGGTGTCGTAATGTGTTTCTTCTTGGATTTATTTCTGCGAAGACAGAAAGTGTAGTTGTCCTTCTTTGTCGCGAACCGTGCTTAAGTGTTAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGCCCCTTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTCAAGATCCCATCTGAACAAGAGCAGTTAAGGGCACGCCAAATTAGTGCACAACAAATAAATAAGGTGGAAGAGTTGTGGAAGACAAATCCTGATGCTTCTTTTGACGACCTTGAGAAGCCTGGTGTAGATGATGAACCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTTATTAAGCTTGAAGCTGATTATGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTCACAATTCGATGGGATATTGGTCTTAACAAGAAGCGTATTGCATACTTTGTATTTCCAAAGGAAGATAACGAGTTGCGGCTGGTACCTGGTGATGAACTACGCTTGCGTTATTCTGGTGATGCTGCACATCCTGCATGGCAGTCAGTGGGTCATGTGATCAAGTTAACTGCACAAGAGGAGGTTGCACTGGAGCTTCGCGCTAGTCAGGGGGTTCCAGTTGATGTTAACCATGGTTTCAGTGTTGATTTTGTCTGGAAGAGTACCAGCTTTGATAGGATGCAAGGAGCTATGAAAACCTTTGCCGTAGATGAGACAAGTGTTAGTGGGTATATATATCATCACTTATTGGGTCATGAAGTTGAGGTTCAGTTGGTGCGTAATGCATTGCCTCGTCGCTTTGGTGCACCAGGGCTTCCCGAACTGAATGCATCACAAGTTTATGCCGTCAAGAGTGTTCTCCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCGCTTGTATACCACATGGCCAAACAAGGTCAGGGACAGGTTTTGGTTTGTGCACCCAGTAATGTAGCTGTGGATCAACTGGCTGAAAAAATAAGTTCTACTGGATTAAAGGTTGTGAGGCTATGTGCAAAATCGAGGGAAGCTGTGAGTTCACCTGTAGAGCATTTAACTCTTCACTATCAGGTTCGACATCTTGACACATCTGATAAGAGTGAACTTCATAAGTTACAACAGCTAAAGGATGAACAAGGAGAACTTTCCAGCAGTGATGAGAAAAAATACAAAGCACTTAAGCGAGCAACCGAGAGGGAGATTTCTCAGAGTGCTGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGGCTTGCAAACTTTAGGTTCCGTCAGGTACTTATTGACGAGTCCACCCAAGCAACAGAACCTGAGTGCCTCATTCCTTTGGTTCTTGGAGCAAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCAGTTATTATGTGCAAGAAAGCAGCTCGTGCTGGGTTAGCACAATCGCTTTTTGAGCGCCTTGTTCTACTCGGTGTCAAACCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGCCTTTCAGAATTTCCCTCAAACAGCTTTTACGAAGGCACTCTGCAAAATGGAGTCACTGTTAATGAAAGGCAATCTTCAGGAATTGATTTCCCATGGCCTGTACCAAACCGTCCCATGCTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGCGGAACATCTTATTTAAATAGGACTGAAGCTGCAAATGTTGAAAAGATTGTAACCACTTTCTTAAAAAGTGGGGTGGTTCCTAGTCAGATTGGTGTGATAACACCTTATGAGGGGCAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTTCTCTTAGGCAGCAACTTTACAAAGAGATTGAGGTTGCTAGTGTTGATTCCTTCCAAGGAAGGGAGAAAGACTACATTATTCTATCATGTGTTAGAAGTAATGAACATCAGGGCATTGGATTCCTGAATGATCCTAGGAGGCTAAATGTTGCTCTGACACGAGCAAGATATGGTATTGTTATTCTGGGAAACCCTAAAGTTCTGAGCAAGCAGCCTTTGTGGAATGGTTTATTGACTCACTACAAGGAACATGAATGCTTAGTTGAAGGACCTTTAAATAACTTGAAGCAGAGTATGGTTCAGTTCCAGAAACCCAAGAAGATCTACAATGAACGAAGGCTTTTTTATGGGGGTGGACCTGGAATTGCAGCTAATGACAATTTTGGTTCTGGTGCTGGCACAAGTTCAGATCGGCGGAGCGGTCGTGGAAGGGGATCTTATATACCTCCTGGCCCACCAAACGGAGCCCATAAACCCGGATTGCACCCTGCTGCATATCCTGTACCAAGGGTTCCCTTGCCTCCTTTTCATGGTGGTCCCCAATCTCAACCATATGCAATTCCATCTCGTGGGGCTGTTCACGGACCAGTTGGTGCTGTTCCTCATGTCCCATCTCCGGGAAGTCGGGGTTTTGGGGCAGGTAGAGGTAATTCCGGTGCTCCAATTGGTAATCATCTTCCACACCAACAGGGCACGCAACAGCCTATTGGGAATATTGGATCTACATTTAACTTCCCTGGTTTAGAGAGTCCTAACAGCCAGCCATCTGTTGGTGGCCCACTGTCGCAACCTGGGTTCGCCAATAATATGCCAGTCCAAGGGGCAGGCCAGTCATTTCGAGATCAATTTACTGTACCTGGATTGTCTCAGGACTTCTTGGGTGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTATAATGTAACGGATTTCTCTACACAGGCTTCTCAAAGTGGGTATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCAGGGAACTTTCTTAATCAGAATTCTCAAGCTGGGTATTCACGTTTTGGTTCTGGAAATGACTTTATGTCTCAGGACTACATGGCCCATGGATCACAGGGTCTCTTCACTCAGGTTGGATTCAGCGATCCCTTGCAAGATGATGCAACACAGAACCATTTCAACATGGCAAATGCTAACCCTCTTCAATCTCAGATGAGTTCTCTCTACTCTCAGCCTTTTGCTCACTACAACACACAGCCGCCAAACATGCAGGCTTCCCAACAGCAGCCTCAGGGTCAGAGCTCCCAAAATCAGAAAATTCACTACAACGGTTGA 3786 0.4606 MDSQQNNNLFDTASQPDTANDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADPSERGGAGSDQQSDASPVSVAPGSATKGRSGSSGGSSQVVDALAAGMSGLNFEDTGDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFDDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQLVRNALPRRFGAPGLPELNASQVYAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMLFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNGLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDNFGSGAGTSSDRRSGRGRGSYIPPGPPNGAHKPGLHPAAYPVPRVPLPPFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNIGSTFNFPGLESPNSQPSVGGPLSQPGFANNMPVQGAGQSFRDQFTVPGLSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMAHGSQGLFTQVGFSDPLQDDATQNHFNMANANPLQSQMSSLYSQPFAHYNTQPPNMQASQQQPQGQSSQNQKIHYNG* 1262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0169 1261 MobiDBLite consensus disorder prediction 1046 1092 - -
Lja2g0169 1261 PANTHER DNA2/NAM7 HELICASE FAMILY 106 1029 IPR045055 -
Lja2g0169 1261 CDD SF1_C_Upf1 716 905 IPR041679 -
Lja2g0169 1261 MobiDBLite consensus disorder prediction 1230 1261 - -
Lja2g0169 1261 MobiDBLite consensus disorder prediction 65 97 - -
Lja2g0169 1261 MobiDBLite consensus disorder prediction 1 97 - -
Lja2g0169 1261 Pfam RNA helicase UPF1, 1B domain 335 424 IPR040812 -
Lja2g0169 1261 Pfam AAA domain 693 888 IPR041679 -
Lja2g0169 1261 MobiDBLite consensus disorder prediction 949 1092 - -
Lja2g0169 1261 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 477 939 IPR027417 -
Lja2g0169 1261 CDD ZBD_UPF1-like 131 253 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lja2g0169 1261 CDD 1B_UPF1-like 336 423 IPR040812 -
Lja2g0169 1261 Gene3D - 336 424 - -
Lja2g0169 1261 Pfam RNA helicase (UPF2 interacting domain) 130 283 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Lja2g0169 1261 Gene3D - 444 714 IPR027417 -
Lja2g0169 1261 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 489 621 IPR014001 -
Lja2g0169 1261 Pfam Type III restriction enzyme, res subunit 483 550 IPR006935 GO:0003677|GO:0005524|GO:0016787
Lja2g0169 1261 MobiDBLite consensus disorder prediction 988 1004 - -
Lja2g0169 1261 MobiDBLite consensus disorder prediction 1 27 - -
Lja2g0169 1261 CDD DEXXQc_UPF1 480 715 - -
Lja2g0169 1261 Pfam AAA domain 582 683 IPR041677 GO:0004386
Lja2g0169 1261 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 106 1029 - -
Lja2g0169 1261 Gene3D - 566 618 - -
Lja2g0169 1261 Gene3D - 715 926 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0169 Lja-Chr2 1459693 1471026 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0169 K14326 - gmx:100795594 2413.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0169 2 1459693 1471026 Lja2g0169 2 1459693 1471026 ECH